Pushing the limits of what is achievable in protein–DNA docking: benchmarking HADDOCK’s performance

3D-DART: a DNA structure modelling server

(2009) M. van Dijk et al.   NUCLEIC ACIDS RESEARCH

Recent Progress and Future Directions in Protein-Protein Docking

(2008) David Ritchie   CURRENT PROTEIN & PEPTIDE SCIENCE

Insights on protein-DNA recognition by coarse grain modelling

(2008) P. Poulain et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures

(2008) Xiang-Jun Lu et al.   Nature Protocols

A protein-DNA docking benchmark

(2008) M. van Dijk et al.   NUCLEIC ACIDS RESEARCH

Structure-based prediction of transcription factor binding sites using a protein-DNA docking approach

(2008) Zhijie Liu et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS