Optimizing the noise versus bias trade-off for Illumina whole genome expression BeadChips

Control of mammary stem cell function by steroid hormone signalling

(2010) Marie-Liesse Asselin-Labat et al.   NATURE

Estimating the proportion of microarray probes expressed in an RNA sample

(2010) Wei Shi et al.   NUCLEIC ACIDS RESEARCH

Statistical methods of background correction for Illumina BeadArray data

(2009) Yang Xie et al.   BIOINFORMATICS

Illumina WG-6 BeadChip strips should be normalized separately

(2009) Wei Shi et al.   BMC BIOINFORMATICS

Filtering for increased power for microarray data analysis

(2009) Amber J Hackstadt et al.   BMC BIOINFORMATICS

Detection call algorithms for high-throughput gene expression microarray data

(2009) K. J. Archer et al.   BRIEFINGS IN BIOINFORMATICS

Aberrant luminal progenitors as the candidate target population for basal tumor development in BRCA1 mutation carriers

(2009) Elgene Lim et al.   NATURE MEDICINE

lumi: a pipeline for processing Illumina microarray

(2008) P. Du et al.   BIOINFORMATICS

Microarray background correction: maximum likelihood estimation for the normal-exponential convolution

(2008) J. D. Silver et al.   BIOSTATISTICS

Statistical issues in the analysis of Illumina data

(2008) Mark J Dunning et al.   BMC BIOINFORMATICS

Consolidated strategy for the analysis of microarray spike-in data

(2008) Matthew N. McCall et al.   NUCLEIC ACIDS RESEARCH

Enhanced identification and biological validation of differential gene expression via Illumina whole-genome expression arrays through the use of the model-based background correction methodology

(2008) Liang-Hao Ding et al.   NUCLEIC ACIDS RESEARCH

Model-based variance-stabilizing transformation for Illumina microarray data

(2008) Simon M. Lin et al.   NUCLEIC ACIDS RESEARCH