R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases

The DICS repository: module-assisted analysis of disease-related gene lists

(2009) S. Dietmann et al.   BIOINFORMATICS

PLIPS, an Automatically Collected Database of Protein Lists Reported by Proteomics Studies

(2009) Alexey V. Antonov et al.   JOURNAL OF PROTEOME RESEARCH

GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists

(2009) A. V. Antonov et al.   NUCLEIC ACIDS RESEARCH

PPI spider: A tool for the interpretation of proteomics data in the context of protein-protein interaction networks

(2009) Alexey V. Antonov et al.   PROTEOMICS

A novel signaling pathway impact analysis

(2008) Adi Laurentiu Tarca et al.   BIOINFORMATICS

Novel and Highly Recurrent Chromosomal Alterations in Sezary Syndrome

(2008) M. H. Vermeer et al.   CANCER RESEARCH

ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data

(2008) Alexey V. Antonov et al.   NUCLEIC ACIDS RESEARCH

Reactome knowledgebase of human biological pathways and processes

(2008) L. Matthews et al.   NUCLEIC ACIDS RESEARCH

KEGG spider: interpretation of genomics data in the context of the global gene metabolic network

(2008) Alexey V Antonov et al.   GENOME BIOLOGY