Open chromatin encoded in DNA sequence is the signature of ‘master’ replication origins in human cells

Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation

(2009) Claire Lemaitre et al.   BMC GENOMICS

The Relationship between DNA Replication and Human Genome Organization

(2009) A. Necsulea et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcription Initiation Activity Sets Replication Origin Efficiency in Mammalian Cells

(2009) Joana Sequeira-Mendes et al.   PLoS Genetics

Precise detection of rearrangement breakpoints in mammalian chromosomes

(2008) Claire Lemaitre et al.   BMC BIOINFORMATICS

Dynamic Regulation of Nucleosome Positioning in the Human Genome

(2008) Dustin E. Schones et al.   CELL

High-Resolution Mapping and Characterization of Open Chromatin across the Genome

(2008) Alan P. Boyle et al.   CELL

Mapping DNase-I hypersensitive sites on human isochores

(2008) Miriam Di Filippo et al.   GENE

Global organization of replication time zones of the mouse genome

(2008) S. Farkash-Amar et al.   GENOME RESEARCH

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

(2008) T. N. Mavrich et al.   GENOME RESEARCH

A revisionist replicon model for higher eukaryotic genomes

(2008) J.L. Hamlin et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

Replication fork movement sets chromatin loop size and origin choice in mammalian cells

(2008) Sylvain Courbet et al.   NATURE

DNA methylation landscapes: provocative insights from epigenomics

(2008) Miho M. Suzuki et al.   NATURE REVIEWS GENETICS

DNA physical properties determine nucleosome occupancy from yeast to fly

(2008) Vincent Miele et al.   NUCLEIC ACIDS RESEARCH

Spontaneous emergence of sequence-dependent rosettelike folding of chromatin fiber

(2008) Ph. St-Jean et al.   PHYSICAL REVIEW E

Genome-wide studies highlight indirect links between human replication origins and gene regulation

(2008) J.-C. Cadoret et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global Reorganization of Replication Domains During Embryonic Stem Cell Differentiation

(2008) Ichiro Hiratani et al.   PLOS BIOLOGY