4.6 Article

NITRILASE1 regulates the exit from proliferation, genome stability and plant development

期刊

NEW PHYTOLOGIST
卷 198, 期 3, 页码 685-698

出版社

WILEY-BLACKWELL
DOI: 10.1111/nph.12185

关键词

Arabidopsis; cell cycle; cytokinesis; filaments; microtubules; NITRILASE 1; polyploidy; programmed cell death

资金

  1. Grant Agency of the Czech Republic [P501/12/2333]
  2. Region Hana for Biotechnological and Agricultural Research [NCZ.1.05/2.1.00/01.0007]
  3. Biotechnology and Biological Sciences Research Council [BBS/B/13314] Funding Source: researchfish

向作者/读者索取更多资源

Nitrilases are highly conserved proteins with catabolic activity but much less understood functions in cell division and apoptosis. To elucidate the biological functions of Arabidopsis NITRILASE1, we characterized its molecular forms, cellular localization and involvement in cell proliferation and plant development. We performed biochemical and mass spectrometry analyses of NITRILASE1 complexes, electron microscopy of nitrilase polymers, imaging of developmental and cellular distribution, silencing and overexpression of nitrilases to study their functions. We found that NITRILASE1 has an intrinsic ability to form filaments. GFP-NITRILASE1 was abundant in proliferating cells, distributed in cytoplasm, in the perinuclear area and associated with microtubules. As cells exited proliferation and entered differentiation, GFP-NITRILASE1 became predominantly nuclear. Nitrilase silencing dose-dependently compromised plant growth, led to loss of tissue organization and sustained proliferation. Cytokinesis was frequently aborted, leading to enlarged polyploid cells. In reverse, independently transformed cell lines overexpressing GFP-NITRILASE1 showed slow growth and increased rate of programmed cell death. Altogether, our data suggest that NITRILASE1 homologues regulate the exit from cell cycle and entry into differentiation and simultaneously are required for cytokinesis. These functions are essential to maintain normal ploidy, genome stability and tissue organization.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Infectious Diseases

Entomological study in an anthroponotic cutaneous leishmaniasis focus in Morocco: Fauna survey, Leishmania infection screening, molecular characterization and MALDI-TOF MS protein profiling of relevant Phlebotomus species

Idris Mhaidi, Mouad Ait Kbaich, Sofia El Kacem, Othmane Daoui, Khadija Akarid, Tatiana Spitzova, Petr Halada, Vit Dvorak, Meryem Lemrani

Summary: This study in Morocco identified sand fly fauna in Ibaraghen village and confirmed the role of P. sergenti as a vector in the Azilal focus of cutaneous leishmaniasis. The relative abundance of other potential vector species also emphasizes the risk of introducing L. infantum and L. major in the province. This is the first combined approach in Morocco to identify sand flies using both morphology and molecular methods.

TRANSBOUNDARY AND EMERGING DISEASES (2022)

Article Chemistry, Analytical

Utilization of Fast Photochemical Oxidation of Proteins and Both Bottom-up and Top-down Mass Spectrometry for Structural Characterization of a Transcription Factor-dsDNA Complex

Marek Polak, Ghazaleh Yassaghi, Daniel Kavan, Frantisek Filandr, Jan Fiala, Zdenek Kukacka, Petr Halada, Dmitry S. Loginov, Petr Novak

Summary: The combination of covalent labeling techniques with mass spectrometry is a progressive approach for studying protein surfaces and protein-ligand interactions. In this study, the interaction interface between the DNA binding domain of the FOXO4 protein and the DNA binding element was mapped. Different approaches were used to confirm the results and compare with other studies, showing consistent findings. This method is important for understanding the structure and dynamics of protein-DNA interactions.

ANALYTICAL CHEMISTRY (2022)

Article Chemistry, Analytical

Ultratrace determination of arsenic by hydride generation atomic absorption spectrometry with preconcentration on gold nanoparticles

Aline Fernandes de Oliveira, Milan Svoboda, Oldrich Benada, Jan Kratzer

Summary: A fast and simple preconcentration step was developed for ultratrace arsenic determination using a quartz modular trap-and-atomizer device. Gold nanoparticles were found to be the most effective preconcentration surface, achieving 90% efficiency under optimized conditions. The method was successfully validated for arsenic determination in various reference materials.

JOURNAL OF ANALYTICAL ATOMIC SPECTROMETRY (2022)

Article Biotechnology & Applied Microbiology

Selenium nanoparticles with boron salt-based compound act synergistically against the brown-rot Serpula lacrymans

Evelina Gablech, Zdenka Fohlerova, Karel Svec, Frantisek Zales, Oldrich Benada, Olga Kofronova, Jana Pekarkova, Ondrej Caha, Imrich Gablech, Jiri Gabriel, Jana Drbohlavova

Summary: The study prepared PVP-Se NPs through wet chemical reduction and characterized their physical and chemical properties using various analytical methods, while also evaluating their toxicological properties. In antifungal experiments, the combination of PVP-Se NPs with a commercial fungicide showed better results than using either alone, demonstrating their synergistic effect and inhibitory effect on fungal growth.

INTERNATIONAL BIODETERIORATION & BIODEGRADATION (2022)

Article Biochemistry & Molecular Biology

PARP inhibition impedes the maturation of nascent DNA strands during DNA replication

Alina Vaitsiankova, Kamila Burdova, Margarita Sobol, Amit Gautam, Oldrich Benada, Hana Hanzlikova, Keith W. Caldecott

Summary: PARP inhibitors hinder the maturation of nascent DNA strands during DNA replication, particularly unligated Okazaki fragments and other discontinuities, resulting in cytotoxic effects. The activation of PARP1 is elevated in cells lacking the FEN1 nuclease, suggesting its involvement in the detection and processing of these DNA replication intermediates. PARP inhibitors disrupt the integrity of nascent DNA strands in both normal and FEN1(-/-) cells, leading to the formation of single-strand nicks or gaps. These findings highlight the importance of unligated Okazaki fragments and other discontinuities in the cytotoxicity of PARP inhibitors.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2022)

Article Environmental Sciences

Culture Isolate of Rickettsia felis from a Tick

Monika Danchenko, Oldrich Benada, L'udovit Skultety, Zuzana Sekeyova

Summary: In this study, a strain of Rickettsia felis was successfully isolated and characterized from a common tick species in Slovakia. It is the first time that R. felis has been isolated from ticks, and further research on its growth properties and gene sequences revealed no nucleotide polymorphisms compared to known strains, but the plasmid pRF delta was absent in this isolate.

INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH (2022)

Article Microbiology

Ms1 RNA Interacts With the RNA Polymerase Core in Streptomyces coelicolor and Was Identified in Majority of Actinobacteria Using a Linguistic Gene Synteny Search

Viola Vankova Hausnerova, Olga Marvalova, Michaela Sikova, Mahmoud Shoman, Jarmila Havelkova, Milada Kambova, Martina Janouskova, Dilip Kumar, Petr Halada, Marek Schwarz, Libor Krasny, Jarmila Hnilicova, Josef Panek

Summary: Bacteria use small non-coding RNAs to regulate gene expression. The study identified a specific RNA called Ms1 in Actinobacteria that binds to the core of RNA polymerase and affects its intracellular level. Through computational search and gene synteny approach, the study also found Ms1 RNA candidates in other Actinobacteria, demonstrating the widespread presence of Ms1 RNA as a class of RNAP binding sRNAs.

FRONTIERS IN MICROBIOLOGY (2022)

Article Parasitology

Identification of blood source preferences and Leishmania infection in sand flies (Diptera: Psychodidae) in north-eastern Algeria

Nacer Eddine Messahel, Kamel Eddine Benallal, Petr Halada, Ismail Lafri, Hemza Manseur, Ahcene Hakem, Karim Houali, Zoubir Harrat, Petr Volf, Vit Dvorak

Summary: Leishmaniases are neglected vector-borne diseases. This study in Algeria revealed the feeding preference of sand flies for cattle and the presence of cattle and dog blood in sand flies, which could play an important role in parasite transmission.

VETERINARY PARASITOLOGY- REGIONAL STUDIES AND REPORTS (2022)

Article Chemistry, Analytical

Top-Down Detection of Oxidative Protein Footprinting by Collision-Induced Dissociation,Electron-Transfer Dissociation, and Electron-Capture Dissociation

Ghazaleh Yassaghi, Zdenek Kukacka, Jan Fiala, Daniel Kavan, Petr Halada, Michael Volny, Petr Novak

Summary: Fast photochemical oxidation of proteins (FPOP) footprinting is a method that uses chemical reactions to label protein structures. It provides information about protein conformation, dynamics, and interactions. FPOP samples can be analyzed using either bottom-up or top-down mass spectrometry approaches. The top-down approach allows for more specific selection of protein subpopulations, but is limited to smaller proteins. Comparison with bottom-up data confirms the usefulness of the top-down approach in oxidative protein footprinting.

ANALYTICAL CHEMISTRY (2022)

Article Cell Biology

A Novel Nanosafety Approach Using Cell Painting, Metabolomics, and Lipidomics Captures the Cellular and Molecular Phenotypes Induced by the Unintentionally Formed Metal-Based (Nano)Particles

Andi Alijagic, Nikolai Scherbak, Oleksandr Kotlyar, Patrik Karlsson, Xuying Wang, Inger Odnevall, Oldrich Benada, Ali Amiryousefi, Lena Andersson, Alexander Persson, Jenny Felth, Henrik Andersson, Maria Larsson, Alexander Hedbrant, Samira Salihovic, Tuulia Hyoetylaeinen, Dirk Repsilber, Eva Saerndahl, Magnus Engwall

Summary: The physicochemical characterization of AMPs revealed their complexity in size, shape, and chemistry. The AMPs exhibited concentration-dependent effects on the cytoskeleton, mitochondria, and cell membranes. Metabolomics and lipidomics analysis provided insight into the inflammation-related metabolites and extensive membrane remodeling induced by AMPs. Overall, AMP exposure resulted in internalization, oxidative stress, cytoskeleton disruption, mitochondrial activation, membrane remodeling, and metabolic reprogramming of lung epithelial cells and macrophages. Integrating Cell Painting with metabolomics and lipidomics offers an advanced nanosafety methodology to capture cellular and molecular phenotypes and understand the biological mechanisms of (nano)particle exposure.
Article Biochemistry & Molecular Biology

The Role of a Cytokinin Antagonist in the Progression of Clubroot Disease

Jana Bibova, Veronika Kabrtova, Veronika Vecerova, Zuzana Kucerova, Martin Hudecek, Lenka Plackova, Ondrej Novak, Miroslav Strnad, Ondrej Plihal

Summary: Plasmodiophora brassicae is a pathogen that causes clubroot disease in cruciferous plants, leading to morphological changes and symptoms such as gall formation and leaf abscission. The homeostasis of cytokinin and auxin appears to be crucial for club development. Study on late-stage infected Arabidopsis thaliana showed changes in cytokinin levels and their role in disease progression.

BIOMOLECULES (2023)

Article Microbiology

Intact O-antigen is critical structure for the exceptional tubular shape of outer membrane vesicles in Francisella tularensis

Jan Bavlovic, Ivona Pavkova, Lucie Balonova, Oldrich Benada, Jiri Stulik, Jana Klimentova

Summary: Francisella tularensis is a highly infectious bacterium that causes tularemia. Bacterial outer membrane vesicles (OMVs) of Francisella play a role in host-pathogen interactions and have potential use in a subunit vaccine. This study focused on the secretion of OMVs in O-antigen mutant strains and found that the presence of LPS and the O-antigen capsule is critical for the virulence and tubular shape of OMVs.

MICROBIOLOGICAL RESEARCH (2023)

Article Oncology

Characterization of RACK1-depleted mammalian cells by a palette of microscopy approaches reveals defects in cell cycle progression and polarity establishment

Vera Chvalova, Vignesh Venkadasubramanian, Zuzana Klimova, Jana Vojtova, Oldrich Benada, Ondrej Vanatko, Tomas Vomastek, Tomas Grousl

Summary: This study used CRISPR/Cas9 and siRNA to decrease the expression of RACK1 in MDCK epithelial cells and Rat2 fibroblasts. The depletion of RACK1 resulted in decreased cell proliferation, increased cell area and perimeter, and the appearance of large binucleated cells, indicating a defect in cell cycle progression. These findings demonstrate the essential role of RACK1 in both epithelial and mesenchymal cell lines.

EXPERIMENTAL CELL RESEARCH (2023)

Article Microbiology

The Deciphering of Growth-Dependent Strategies for Quorum-Sensing Networks in Pseudomonas aeruginosa

Tereza Jurikova, Hynek Macha, Vanda Lupjanova, Tomas Pluhacek, Helena Maresova, Barbora Papouskova, Dominika Luptakova, Rutuja H. Patil, Oldrich Benada, Michal Grulich, Andrea Palyzova

Summary: Pseudomonas aeruginosa is a significant pathogen in hospital-acquired infections, often collaborating with the opportunistic fungal pathogen Aspergillus fumigatus in respiratory infections. This study identifies a potential new biomarker, QS molecule portfolio, which affects virulence factor secretion and biofilm formation in P. aeruginosa. The study also demonstrates changes in QS molecule levels during the transition from planktonic to sessile cells and in co-cultures with A. fumigatus.

MICROORGANISMS (2023)

Article Materials Science, Textiles

Effect of wire and needle spinning on the direct manufacturing PAN/amine nanofibrous membranes for CO2 sorption

Michal Syrovy, Pavla Capkova, Petr Rysanek, Oldrich Benada, Monika Vostinakova

Summary: The manufacturing of membranes for CO2 capture is an important research topic. This study aims to achieve maximum CO2 sorption capacity while maintaining air permeability with minimal technological steps. Electrospun nanofibrous membranes PAN/TETA and PAN/TEPA were prepared using one-step technology and two different spinning conditions - needle spinning and wire spinning. The best result was obtained for wire spinning PAN_TEPA_2% with a CO2 sorption capacity of 11.7 +/- 1.3 cm(3)/g and air permeability of 53 +/- 5 L/m(2)/s, providing potential for practical use.

JOURNAL OF INDUSTRIAL TEXTILES (2023)

暂无数据