Neuronal Tracing for Connectomic Studies

Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model

(2010) H. Peng et al.   BIOINFORMATICS

To the readers of Current Opinion in Neurobiology

(2010)   CURRENT OPINION IN NEUROBIOLOGY

Neuron tracing in perspective

(2010) Erik Meijering   CYTOMETRY PART A

Ssecrett and NeuroTrace: Interactive Visualization and Analysis Tools for Large-Scale Neuroscience Data Sets

(2010) Won-Ki Jeong et al.   IEEE COMPUTER GRAPHICS AND APPLICATIONS

The Viking viewer for connectomics: scalable multi-user annotation and summarization of large volume data sets

(2010) J.R. ANDERSON et al.   JOURNAL OF MICROSCOPY

Detection of neuron membranes in electron microscopy images using a serial neural network architecture

(2010) Elizabeth Jurrus et al.   MEDICAL IMAGE ANALYSIS

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

(2010) Hanchuan Peng et al.   NATURE BIOTECHNOLOGY

Ultrastructural Analysis of Hippocampal Neuropil from the Connectomics Perspective

(2010) Yuriy Mishchenko et al.   NEURON

Superresolution Imaging of Chemical Synapses in the Brain

(2010) Adish Dani et al.   NEURON

Toward discovery science of human brain function

(2010) B. B. Biswal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From the Connectome to the Synaptome: An Epic Love Story

(2010) J. DeFelipe   SCIENCE

Bioimage Informatics for Experimental Biology

(2009) Jason R. Swedlow et al.   Annual Review of Biophysics

Advances in Light Microscopy for Neuroscience

(2009) Brian A. Wilt et al.   Annual Review of Neuroscience

3D structural imaging of the brain with photons and electrons

(2009) Moritz Helmstaedter et al.   CURRENT OPINION IN NEUROBIOLOGY

Three-dimensional neuron tracing by voxel scooping

(2009) Alfredo Rodriguez et al.   JOURNAL OF NEUROSCIENCE METHODS

Subdiffraction resolution in continuous samples

(2009) Rainer Heintzmann et al.   Nature Photonics

Convolutional Networks Can Learn to Generate Affinity Graphs for Image Segmentation

(2009) Srinivas C. Turaga et al.   NEURAL COMPUTATION

MDL Constrained 3-D Grayscale Skeletonization Algorithm for Automated Extraction of Dendrites and Spines from Fluorescence Confocal Images

(2009) Xiaosong Yuan et al.   NEUROINFORMATICS

Semi-Automated Reconstruction of Neural Processes from Large Numbers of Fluorescence Images

(2009) Ju Lu et al.   PLoS One

The Interscutularis Muscle Connectome

(2009) Ju Lu et al.   PLOS BIOLOGY

Bioimage informatics: a new area of engineering biology

(2008) Hanchuan Peng   BIOINFORMATICS

Improved automatic midline tracing of neurites with Neuromantic

(2008) Darren R Myatt et al.   BMC NEUROSCIENCE

Ome sweet ome: what can the genome tell us about the connectome?

(2008) Jeff W Lichtman et al.   CURRENT OPINION IN NEUROBIOLOGY

Hardware Accelerated Segmentation of Complex Volumetric Filament Networks

(2008) David Mayerich et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Serial Section Scanning Electron Microscopy of Adult Brain Tissue Using Focused Ion Beam Milling

(2008) G. Knott et al.   JOURNAL OF NEUROSCIENCE

Detection of the optimal neuron traces in confocal microscopy images

(2008) Zlatko Vasilkoski et al.   JOURNAL OF NEUROSCIENCE METHODS

Automation of 3D reconstruction of neural tissue from large volume of conventional serial section transmission electron micrographs

(2008) Yuriy Mishchenko   JOURNAL OF NEUROSCIENCE METHODS

Using nonlinear diffusion and mean shift to detect and connect cross-sections of axons in 3D optical microscopy images

(2008) Hongmin Cai et al.   MEDICAL IMAGE ANALYSIS

Axon tracking in serial block-face scanning electron microscopy

(2008) Elizabeth Jurrus et al.   MEDICAL IMAGE ANALYSIS

A technicolour approach to the connectome

(2008) Jeff W. Lichtman et al.   NATURE REVIEWS NEUROSCIENCE

3D Axon Structure Extraction and Analysis in Confocal Fluorescence Microscopy Images

(2008) Yong Zhang et al.   NEURAL COMPUTATION

Live-cell imaging of dendritic spines by STED microscopy

(2008) U. V. Nagerl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Morphological Identity of Insect Dendrites

(2008) Hermann Cuntz et al.   PLoS Computational Biology

Contour-propagation algorithms for semi-automated reconstruction of neural processes

(2007) Jakob H. Macke et al.   JOURNAL OF NEUROSCIENCE METHODS