Error prevention and mitigation as forces in the evolution of genes and genomes

Haploinsufficiency and the sex chromosomes from yeasts to humans

(2011) Michaela de Clare et al.   BMC BIOLOGY

Transcriptional Coupling of Neighboring Genes and Gene Expression Noise: Evidence that Gene Orientation and Noncoding Transcripts Are Modulators of Noise

(2011) Guang-Zhong Wang et al.   Genome Biology and Evolution

Antisense expression increases gene expression variability and locus interdependency

(2011) Z. Xu et al.   Molecular Systems Biology

Non-adaptive origins of interactome complexity

(2011) Ariel Fernández et al.   NATURE

Gene clustering pattern, promoter architecture, and gene expression stability in eukaryotic genomes

(2011) Y. H. Woo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of molecular error rates and the consequences for evolvability

(2011) E. Rajon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of gene expression noise on organismal fitness and the efficacy of natural selection

(2011) Z. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Preventing Dangerous Nonsense: Selection for Robustness to Transcriptional Error in Human Genes

(2011) Brian P. Cusack et al.   PLoS Genetics

Optimization of speed and accuracy of decoding in translation

(2010) Ingo Wohlgemuth et al.   EMBO JOURNAL

Unique Cost Dynamics Elucidate the Role of Frameshifting Errors in Promoting Translational Robustness

(2010) Tobias Warnecke et al.   Genome Biology and Evolution

Overlapping codes within protein-coding sequences

(2010) S. Itzkovitz et al.   GENOME RESEARCH

GroEL dependency affects codon usage—support for a critical role of misfolding in gene evolution

(2010) Tobias Warnecke et al.   Molecular Systems Biology

U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation

(2010) Daisuke Kaida et al.   NATURE

Noisy Splicing Drives mRNA Isoform Diversity in Human Cells

(2010) Joseph K. Pickrell et al.   PLoS Genetics

Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts

(2010) Meryem Mekouar et al.   GENOME BIOLOGY

Why there is more to protein evolution than protein function: splicing, nucleosomes and dual-coding sequence

(2009) Tobias Warnecke et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

The evolutionary consequences of erroneous protein synthesis

(2009) D. Allan Drummond et al.   NATURE REVIEWS GENETICS

Stochastic noise in splicing machinery

(2009) Eugene Melamud et al.   NUCLEIC ACIDS RESEARCH

Splice-site pairing is an intrinsically high fidelity process

(2009) Kristi L. Fox-Walsh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stochasticity in Protein Levels Drives Colinearity of Gene Order in Metabolic Operons of Escherichia coli

(2009) Károly Kovács et al.   PLOS BIOLOGY

Role of Translational Coupling in Robustness of Bacterial Chemotaxis Pathway

(2009) Linda Løvdok et al.   PLOS BIOLOGY

Dosage compensation on the active X chromosome minimizes transcriptional noise of X-linked genes in mammals

(2009) Shanye Yin et al.   GENOME BIOLOGY

Two strategies for gene regulation by promoter nucleosomes

(2008) I. Tirosh et al.   GENOME RESEARCH

A Neutral Origin for Error Minimization in the Genetic Code

(2008) Steven E. Massey   JOURNAL OF MOLECULAR EVOLUTION

Translational control of intron splicing in eukaryotes

(2008) Olivier Jaillon et al.   NATURE