Selecting protein N-terminal peptides by combined fractional diagonal chromatography

The substrate specificity profile of human granzyme A

(2010) Petra Van Damme et al.   BIOLOGICAL CHEMISTRY

Who gets cut during cell death?

(2010) Francis Impens et al.   CURRENT OPINION IN CELL BIOLOGY

A Quantitative Proteomics Design for Systematic Identification of Protease Cleavage Events

(2010) Francis Impens et al.   MOLECULAR & CELLULAR PROTEOMICS

Probing the Efficiency of Proteolytic Events by Positional Proteomics

(2010) Kim Plasman et al.   MOLECULAR & CELLULAR PROTEOMICS

Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products

(2010) Oded Kleifeld et al.   NATURE BIOTECHNOLOGY

Complementary positional proteomics for screening substrates of endo- and exoproteases

(2010) Petra Van Damme et al.   NATURE METHODS

Proteome-wide analysis of protein carboxy termini: C terminomics

(2010) Oliver Schilling et al.   NATURE METHODS

MS-driven protease substrate degradomics

(2010) Francis Impens et al.   PROTEOMICS

Global Analysis of the Mitochondrial N-Proteome Identifies a Processing Peptidase Critical for Protein Stability

(2009) F.-Nora Vögtle et al.   CELL

Proteome-wide Substrate Analysis Indicates Substrate Exclusion as a Mechanism to Generate Caspase-7VersusCaspase-3 Specificity

(2009) Dieter Demon et al.   MOLECULAR & CELLULAR PROTEOMICS

Identification and Quantitation of Newly Synthesized Proteins inEscherichia coliby Enrichment of Azidohomoalanine-labeled Peptides with Diagonal Chromatography

(2009) Gertjan Kramer et al.   MOLECULAR & CELLULAR PROTEOMICS

Structural and kinetic determinants of protease substrates

(2009) John C Timmer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structure of granzyme C reveals an unusual mechanism of protease autoinhibition

(2009) D. Kaiserman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global profiling of protease cleavage sites by chemoselective labeling of protein N-termini

(2009) G. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans

(2009) T. Arnesen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A guide to the Proteomics Identifications Database proteomics data repository

(2009) Juan Antonio Vizcaíno et al.   PROTEOMICS

Identification and Functional Characterization of N-Terminally Acetylated Proteins in Drosophila melanogaster

(2009) Sandra Goetze et al.   PLOS BIOLOGY

Abolition of stress-induced protein synthesis sensitizes leukemia cells to anthracycline-induced death

(2008) G. Gausdal et al.   BLOOD

OpenMS – An open-source software framework for mass spectrometry

(2008) Marc Sturm et al.   BMC BIOINFORMATICS

Global Sequencing of Proteolytic Cleavage Sites in Apoptosis by Specific Labeling of Protein N Termini

(2008) Sami Mahrus et al.   CELL

Ortho-proteogenomics: Multiple proteomes investigation through orthology and a new MS-based protocol

(2008) S. Gallien et al.   GENOME RESEARCH

Proteases: Multifunctional Enzymes in Life and Disease

(2008) Carlos López-Otín et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Analysis of Protein Processing by N-terminal Proteomics Reveals Novel Species-specific Substrate Determinants of Granzyme B Orthologs

(2008) Petra Van Damme et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted Peptidecentric Proteomics Reveals Caspase-7 as a Substrate of the Caspase-1 Inflammasomes

(2008) Mohamed Lamkanfi et al.   MOLECULAR & CELLULAR PROTEOMICS

Peptizer, a Tool for Assessing False Positive Peptide Identifications and Manually Validating Selected Results

(2008) Kenny Helsens et al.   MOLECULAR & CELLULAR PROTEOMICS

Mechanistic insight into taxol-induced cell death

(2008) F Impens et al.   ONCOGENE

Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC)

(2008) An Staes et al.   PROTEOMICS

Assigning Significance to Peptides Identified by Tandem Mass Spectrometry Using Decoy Databases

(2007) Lukas Käll et al.   JOURNAL OF PROTEOME RESEARCH