A microfluidic device and computational platform for high-throughput live imaging of gene expression

Plant-in-chip: Microfluidic system for studying root growth and pathogenic interactions in Arabidopsis

(2011) Archana Parashar et al.   APPLIED PHYSICS LETTERS

Cell Identity Regulators Link Development and Stress Responses in the Arabidopsis Root

(2011) Anjali S. Iyer-Pascuzzi et al.   DEVELOPMENTAL CELL

Tissue-specific cell sorting from Drosophila embryos: Application to gene expression analysis

(2011) Pierre-Adiren Salmand et al.   FLY

Adaptive Cell Segmentation and Tracking for Volumetric Confocal Microscopy Images of a Developing Plant Meristem

(2011) Min Liu et al.   Molecular Plant

The RootChip: An Integrated Microfluidic Chip for Plant Science

(2011) G. Grossmann et al.   PLANT CELL

High-resolution live imaging of plant growth in near physiological bright conditions using light sheet fluorescence microscopy

(2011) Alexis Maizel et al.   PLANT JOURNAL

Quantitation of Cellular Dynamics in Growing Arabidopsis Roots with Light Sheet Microscopy

(2011) Giovanni Sena et al.   PLoS One

Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo

(2010) Zafer Aydin et al.   BMC BIOINFORMATICS

Going deeper than microscopy: the optical imaging frontier in biology

(2010) Vasilis Ntziachristos   NATURE METHODS

CellCognition: time-resolved phenotype annotation in high-throughput live cell imaging

(2010) Michael Held et al.   NATURE METHODS

Automated sorting of live C. elegans using laFACS

(2010) Anita G Fernandez et al.   NATURE METHODS

Bisque: a platform for bioimage analysis and management

(2009) Kristian Kvilekval et al.   BIOINFORMATICS

Globally optimal stitching of tiled 3D microscopic image acquisitions

(2009) S. Preibisch et al.   BIOINFORMATICS

Analysis of Cell Fate from Single-Cell Gene Expression Profiles in C. elegans

(2009) Xiao Liu et al.   CELL

A 3D digital atlas of C. elegans and its application to single-cell analyses

(2009) Fuhui Long et al.   NATURE METHODS

Plasticity of Arabidopsis Root Gravitropism throughout a Multidimensional Condition Space Quantified by Automated Image Analysis

(2009) T. L. Durham Brooks et al.   PLANT PHYSIOLOGY

Mapping the gene expression universe

(2008) Eric Lécuyer et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT