A latent capacity for evolutionary innovation through exaptation in metabolic systems

A Comparison of Genotype-Phenotype Maps for RNA and Proteins

(2012) Evandro Ferrada et al.   BIOPHYSICAL JOURNAL

Genetic changes during a laboratory adaptive evolution process that allowed fast growth in glucose to an Escherichia coli strain lacking the major glucose transport system

(2012) César Aguilar et al.   BMC GENOMICS

Superessential reactions in metabolic networks

(2012) A. Barve et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Network Context and Selection in the Evolution to Enzyme Specificity

(2012) H. Nam et al.   SCIENCE

Selection-Driven Gene Loss in Bacteria

(2012) Sanna Koskiniemi et al.   PLoS Genetics

Genotype networks, innovation, and robustness in sulfur metabolism

(2011) João F Matias Rodrigues et al.   BMC Systems Biology

Genotype networks in metabolic reaction spaces

(2010) Areejit Samal et al.   BMC Systems Biology

High-throughput generation, optimization and analysis of genome-scale metabolic models

(2010) Christopher S Henry et al.   NATURE BIOTECHNOLOGY

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks

(2009) João F. Matias Rodrigues et al.   PLoS Computational Biology

Engineering Pseudomonas putida S12 for Efficient Utilization of D-Xylose and L-Arabinose

(2008) J.-P. Meijnen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Multifunctionality and Robustness Trade-Offs in Model Genetic Circuits

(2008) Olivier C. Martin et al.   BIOPHYSICAL JOURNAL

Evolvability and hierarchy in rewired bacterial gene networks

(2008) Mark Isalan et al.   NATURE

The Ascent of the Abundant: How Mutational Networks Constrain Evolution

(2008) Matthew C. Cowperthwaite et al.   PLoS Computational Biology