标题
Computational modeling of ion transport through nanopores
作者
关键词
-
出版物
Nanoscale
Volume 4, Issue 20, Pages 6166
出版商
Royal Society of Chemistry (RSC)
发表日期
2012-06-06
DOI
10.1039/c2nr31024d
参考文献
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- (2012) Zhongyue Sun et al. CHEMICAL COMMUNICATIONS
- Ionic force field optimization based on single-ion and ion-pair solvation properties: Going beyond standard mixing rules
- (2012) Maria Fyta et al. JOURNAL OF CHEMICAL PHYSICS
- Protein Ion Channels as Molecular Ratchets. Switchable Current Modulation in Outer Membrane Protein F Porin Induced by Millimolar La3+ Ions
- (2012) Carmina Verdiá-Báguena et al. Journal of Physical Chemistry C
- Predicting the DNA Sequence Dependence of Nanopore Ion Current Using Atomic-Resolution Brownian Dynamics
- (2012) Jeffrey Comer et al. Journal of Physical Chemistry C
- Electronic Barcoding of a Viral Gene at the Single-Molecule Level
- (2012) Alon Singer et al. NANO LETTERS
- Reading DNA at single-nucleotide resolution with a mutant MspA nanopore and phi29 DNA polymerase
- (2012) Elizabeth A Manrao et al. NATURE BIOTECHNOLOGY
- Ion exclusion and electrokinetic effects resulting from electro-osmotic flow of salt solutions in charged silica nanopores
- (2012) Neil R. Haria et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Computational Investigation of DNA Detection Using Graphene Nanopores
- (2011) Chaitanya Sathe et al. ACS Nano
- Optical Gating of Photosensitive Synthetic Ion Channels
- (2011) Mubarak Ali et al. ADVANCED FUNCTIONAL MATERIALS
- Current and selectivity in a model sodium channel under physiological conditions: Dynamic Monte Carlo simulations
- (2011) Éva Csányi et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Constant electric field simulations of the membrane potential illustrated with simple systems
- (2011) James Gumbart et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Molecular Dynamics Studies of Ion Permeation in VDAC
- (2011) Huan Rui et al. BIOPHYSICAL JOURNAL
- Computational Electrophysiology: The Molecular Dynamics of Ion Channel Permeation and Selectivity in Atomistic Detail
- (2011) Carsten Kutzner et al. BIOPHYSICAL JOURNAL
- Brownian Dynamics Simulations of Ion Transport through the VDAC
- (2011) Kyu Il Lee et al. BIOPHYSICAL JOURNAL
- Biomimetic smart nanopores and nanochannels
- (2011) Xu Hou et al. CHEMICAL SOCIETY REVIEWS
- Biological and chemical sensors based on graphene materials
- (2011) Yuxin Liu et al. CHEMICAL SOCIETY REVIEWS
- Water and ion transport through functionalised carbon nanotubes: implications for desalination technology
- (2011) Ben Corry Energy & Environmental Science
- Inverse problems in ion channel modelling
- (2011) Martin Burger INVERSE PROBLEMS
- Combined Metadynamics and Umbrella Sampling Method for the Calculation of Ion Permeation Free Energy Profiles
- (2011) Yong Zhang et al. Journal of Chemical Theory and Computation
- Constant pH Molecular Dynamics in Explicit Solvent with λ-Dynamics
- (2011) Serena Donnini et al. Journal of Chemical Theory and Computation
- Constant pH Molecular Dynamics Simulations of Nucleic Acids in Explicit Solvent
- (2011) Garrett B. Goh et al. Journal of Chemical Theory and Computation
- Rectification of the Current in α-Hemolysin Pore Depends on the Cation Type: The Alkali Series Probed by Molecular Dynamics Simulations and Experiments
- (2011) Swati Bhattacharya et al. Journal of Physical Chemistry C
- Probing the Transport of Ionic Liquids in Aqueous Solution through Nanopores
- (2011) Niraj Modi et al. Journal of Physical Chemistry Letters
- Improved Parametrization of Li+, Na+, K+, and Mg2+ Ions for All-Atom Molecular Dynamics Simulations of Nucleic Acid Systems
- (2011) Jejoong Yoo et al. Journal of Physical Chemistry Letters
- Mechanism of Ion Permeation and Selectivity in a Voltage Gated Sodium Channel
- (2011) Ben Corry et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Atoms-to-microns model for small solute transport through sticky nanochannels
- (2011) Rogan Carr et al. LAB ON A CHIP
- Computational modeling of transport in synthetic nanotubes
- (2011) Tamsyn A. Hilder et al. Nanomedicine-Nanotechnology Biology and Medicine
- Slowing and controlling the translocation of DNA in a solid-state nanopore
- (2011) Binquan Luan et al. Nanoscale
- Testing the Applicability of Nernst-Planck Theory in Ion Channels: Comparisons with Brownian Dynamics Simulations
- (2011) Chen Song et al. PLoS One
- Concentration Dependent Ion Selectivity in VDAC: A Molecular Dynamics Simulation Study
- (2011) Eva-Maria Krammer et al. PLoS One
- Intermediate states of the Kv1.2 voltage sensor from atomistic molecular dynamics simulations
- (2011) L. Delemotte et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Engineering aspects of biological ion channels—from biosensors to computational models for permeation
- (2011) Vikram Krishnamurthy et al. PROTOPLASMA
- Biomimetic nanopores: learning from and about nature
- (2011) Stefan W. Kowalczyk et al. TRENDS IN BIOTECHNOLOGY
- Computational Microscopy of the Role of Protonable Surface Residues in Nanoprecipitation Oscillations
- (2010) Eduardo R. Cruz-Chu et al. ACS Nano
- Linearity, saturation and blocking in a large multiionic channel: Divalent cation modulation of the OmpF porin conductance
- (2010) Elena García-Giménez et al. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
- Bridging Timescales and Length Scales: From Macroscopic Flux to the Molecular Mechanism of Antibiotic Diffusion through Porins
- (2010) Eric Hajjar et al. BIOPHYSICAL JOURNAL
- Synthetic Chloride-Selective Carbon Nanotubes Examined by Using Molecular and Stochastic Dynamics
- (2010) Tamsyn A. Hilder et al. BIOPHYSICAL JOURNAL
- Exploring the Ion Selectivity Properties of a Large Number of Simplified Binding Site Models
- (2010) Benoît Roux BIOPHYSICAL JOURNAL
- Comparing the Temperature-Dependent Conductance of the Two Structurally Similar E. coli Porins OmpC and OmpF
- (2010) István Biró et al. BIOPHYSICAL JOURNAL
- Coordination Numbers of K+ and Na+ Ions Inside the Selectivity Filter of the KcsA Potassium Channel: Insights from First Principles Molecular Dynamics
- (2010) Denis Bucher et al. BIOPHYSICAL JOURNAL
- Applications of biological pores in nanomedicine, sensing, and nanoelectronics
- (2010) Sheereen Majd et al. CURRENT OPINION IN BIOTECHNOLOGY
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- (2010) Vicente M. Aguilella et al. Integrative Biology
- Energy variational analysis of ions in water and channels: Field theory for primitive models of complex ionic fluids
- (2010) Bob Eisenberg et al. JOURNAL OF CHEMICAL PHYSICS
- Dissociation of NaCl in water from ab initio molecular dynamics simulations
- (2010) Jeff Timko et al. JOURNAL OF CHEMICAL PHYSICS
- Molecular Dynamics in Physiological Solutions: Force Fields, Alkali Metal Ions, and Ionic Strength
- (2010) Chao Zhang et al. Journal of Chemical Theory and Computation
- Simulating Monovalent and Divalent Ions in Aqueous Solution Using a Drude Polarizable Force Field
- (2010) Haibo Yu et al. Journal of Chemical Theory and Computation
- Ion Selectivity of the KcsA Channel: A Perspective from Multi-Ion Free Energy Landscapes
- (2010) Bernhard Egwolf et al. JOURNAL OF MOLECULAR BIOLOGY
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- (2010) Kozhinjampara R. Mahendran et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Good Practices in Free-Energy Calculations
- (2010) Andrew Pohorille et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Multiple Scales in the Simulation of Ion Channels and Proteins
- (2010) Bob Eisenberg Journal of Physical Chemistry C
- High-Performance Scalable Molecular Dynamics Simulations of a Polarizable Force Field Based on Classical Drude Oscillators in NAMD
- (2010) Wei Jiang et al. Journal of Physical Chemistry Letters
- New developments in nanopore research—from fundamentals to applications
- (2010) Tim Albrecht et al. JOURNAL OF PHYSICS-CONDENSED MATTER
- Permeation through nanochannels: revealing fast kinetics
- (2010) Kozhinjampara R Mahendran et al. JOURNAL OF PHYSICS-CONDENSED MATTER
- DNA Translocation through Graphene Nanopores
- (2010) Christopher A. Merchant et al. NANO LETTERS
- DNA Translocation through Graphene Nanopores
- (2010) Grégory F. Schneider et al. NANO LETTERS
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- (2010) Aleksei Aksimentiev Nanoscale
- Structural mechanism of C-type inactivation in K+ channels
- (2010) Luis G. Cuello et al. NATURE
- Structural basis for the coupling between activation and inactivation gates in K+ channels
- (2010) Luis G. Cuello et al. NATURE
- Principles of conduction and hydrophobic gating in K+ channels
- (2010) M. O. Jensen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Simulation of electrokinetics at the nanoscale: inversion of selectivity in a bio-nanochannel
- (2010) Marcel Aguilella-Arzo et al. Soft Matter
- Structure, Dynamics, and Ion Conductance of the Phospholamban Pentamer
- (2009) Christopher Maffeo et al. BIOPHYSICAL JOURNAL
- Transitions between Closed and Open Conformations of TolC: The Effects of Ions in Simulations
- (2009) Robert Schulz et al. BIOPHYSICAL JOURNAL
- Understanding Ion Conductance on a Molecular Level: An All-Atom Modeling of the Bacterial Porin OmpF
- (2009) Soroosh Pezeshki et al. BIOPHYSICAL JOURNAL
- Diffusion, Exclusion, and Specific Binding in a Large Channel: A Study of OmpF Selectivity Inversion
- (2009) Antonio Alcaraz et al. BIOPHYSICAL JOURNAL
- Nanopore analytics: sensing of single molecules
- (2009) Stefan Howorka et al. CHEMICAL SOCIETY REVIEWS
- Engineered voltage-responsive nanopores
- (2009) Zuzanna S. Siwy et al. CHEMICAL SOCIETY REVIEWS
- Ion transport in nanofluidic channels
- (2009) Hirofumi Daiguji CHEMICAL SOCIETY REVIEWS
- Molecular dynamics simulations of membrane channels and transporters
- (2009) Fatemeh Khalili-Araghi et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Molecular control of ionic conduction in polymer nanopores
- (2009) Eduardo R. Cruz-Chu et al. FARADAY DISCUSSIONS
- A computational study of ion conductance in the KcsA K+ channel using a Nernst–Planck model with explicit resident ions
- (2009) Yong-Woon Jung et al. JOURNAL OF CHEMICAL PHYSICS
- On a novel rate theory for transport in narrow ion channels and its application to the study of flux optimization via geometric effects
- (2009) E. Abad et al. JOURNAL OF CHEMICAL PHYSICS
- Rational design of ion force fields based on thermodynamic solvation properties
- (2009) Dominik Horinek et al. JOURNAL OF CHEMICAL PHYSICS
- The Electrostatics of VDAC: Implications for Selectivity and Gating
- (2009) Om P. Choudhary et al. JOURNAL OF MOLECULAR BIOLOGY
- Slowing DNA Translocation through Nanopores Using a Solution Containing Organic Salts
- (2009) Ranulu Samanthi S. de Zoysa et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Ionic Current Rectification through Silica Nanopores
- (2009) Eduardo R. Cruz-Chu et al. Journal of Physical Chemistry C
- Simulation of Osmotic Pressure in Concentrated Aqueous Salt Solutions
- (2009) Yun Luo et al. Journal of Physical Chemistry Letters
- Exploring Ion Permeation Energetics in Gramicidin A Using Polarizable Charge Equilibration Force Fields
- (2009) Sandeep Patel et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Simulations of anion transport through OprP reveal the molecular basis for high affinity and selectivity for phosphate
- (2009) P. Pongprayoon et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Artificial Brownian motors: Controlling transport on the nanoscale
- (2009) Peter Hänggi et al. REVIEWS OF MODERN PHYSICS
- Electric and electrophoretic inversion of the DNA charge in multivalent electrolytes
- (2009) Binquan Luan et al. Soft Matter
- Poisson-Nernst-Planck Models of Nonequilibrium Ion Electrodiffusion through a Protegrin Transmembrane Pore
- (2009) Dan S. Bolintineanu et al. PLoS Computational Biology
- Synthetic Nanopores as a Test Case for Ion Channel Theories: The Anomalous Mole Fraction Effect without Single Filing
- (2008) Dirk Gillespie et al. BIOPHYSICAL JOURNAL
- The Selectivity of K+ Ion Channels: Testing the Hypotheses
- (2008) Philip W. Fowler et al. BIOPHYSICAL JOURNAL
- Physical Insights into Permeation of and Resistance to Antibiotics in Bacteria
- (2008) Matteo Ceccarelli et al. CURRENT DRUG TARGETS
- Transport at the nanoscale: temperature dependence of ion conductance
- (2008) Catalin Chimerel et al. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
- Modeling Membranes under a Transmembrane Potential
- (2008) Lucie Delemotte et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular Simulations
- (2008) In Suk Joung et al. JOURNAL OF PHYSICAL CHEMISTRY B
- The Role of Conformation in Ion Permeation in a K+Channel
- (2008) Carmen Domene et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Modifying the surface charge of single track-etched conical nanopores in polyimide
- (2008) M Ali et al. NANOTECHNOLOGY
- The potential and challenges of nanopore sequencing
- (2008) Daniel Branton et al. NATURE BIOTECHNOLOGY
- The porin and the permeating antibiotic: a selective diffusion barrier in Gram-negative bacteria
- (2008) Jean-Marie Pagès et al. NATURE REVIEWS MICROBIOLOGY
- Rectification in synthetic conical nanopores: A one-dimensional Poisson-Nernst-Planck model
- (2008) I. D. Kosińska et al. PHYSICAL REVIEW E
- Control of Cation Permeation through the Nicotinic Receptor Channel
- (2008) Hai-Long Wang et al. PLoS Computational Biology
- Energetics of Divalent Selectivity in a Calcium Channel: The Ryanodine Receptor Case Study
- (2007) Dirk Gillespie BIOPHYSICAL JOURNAL
- Detection of DNA Sequences Using an Alternating Electric Field in a Nanopore Capacitor
- (2007) Grigori Sigalov et al. NANO LETTERS
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