Article
Peripheral Vascular Disease
Khushbu Rauniyar, Honey Bokharaie, Michael Jeltsch
Summary: This study comprehensively analyzed the evolutionary relationships of PDGF/VEGF growth factors and proposed a phylogenetic tree. Whole-genome duplications in vertebrates contribute to the diversity of PDGF/VEGF, but limited duplications are necessary to explain the emergence pattern. The oldest phylogenetically PDGF/VEGF-like growth factor likely had a BR3P signature in the C-terminus, similar to modern lymphangiogenic growth factors. Some younger VEGF genes are absent in specific vertebrate clades, while PDGF/VEGF gene duplications frequently occur in fish on top of fish-specific whole-genome duplications.
Article
Plant Sciences
Alexander N. Schmidt-Lebuhn, Jessica Bovill
Summary: The Australasian clade within tribe Gnaphalieae of the Asteraceae family in Australia consists of diverse plant species, with four major clades identified. The phylogenetic analysis revealed distinct groupings, including the Euchiton, Cassinia, Waitzia, and Angianthus clades, which largely align with previous morphological analysis and classification. The evolutionary history and ancestral range of these plant groups shed light on their origins and diversification in Australia.
Article
Plant Sciences
Rachael M. Fowler, Daniel J. Murphy, Todd G. B. McLay, Bevan J. Buirchell, Robert J. Chinnock, Michael J. Bayly
Summary: This study conducted phylogenetic analysis of genera in tribe Myoporeae using nuclear ribosomal cistron data, revealing Eremophila as a paraphyletic group with other genera nested within it. The suggestion to synonymize Calamphoreus and Diocirea under Eremophila was proposed as an immediate step, while additional phylogenetic data are needed to clarify the relationships of Bontia, Glycocystis, and Myoporum before further taxonomic changes are proposed.
Article
Mycology
Jian-Hua Hu, Wen-Jie Yu, Lun-Sha Deng, Yu-Guang Fan, Tolgor Bau, Li-Ping Tang, Wen-Fei Lin, Chun-Ying Deng
Summary: This article reports three new species of the genus Mallocybe discovered in China, including M. pallidipes collected from Populus in northeastern China, M. aurantiodisca found in subtropical evergreen broad-leaved forests dominated by Castanopsis in Zhejiang and Guizhou provinces, and M. longicystis found in fagaceous forests in tropical and subtropical China. Morphological and molecular analysis revealed that these new species feature elongate cheilocystidia and group with three North American species in a fully supported clade. Finally, the systematic position of the new species and infrageneric phylogeny of the genus are discussed.
MYCOLOGICAL PROGRESS
(2023)
Article
Parasitology
B. Neov, G. P. Vasileva, G. Radoslavov, P. Hristov, D. T. J. Littlewood, B. B. Georgiev
Summary: This study aimed to test a hypothesis for phylogenetic relationships among mammalian hymenolepidid tapeworms using molecular analyses and phylogenetics, revealing diverse host switching and evolutionary events among different clades.
JOURNAL OF HELMINTHOLOGY
(2021)
Article
Microbiology
Sabrina Di Gregorio, Maria Sol Haim, Jesus Vielma Vallenilla, Victoria Cohen, Lucia Rago, Lucia Gulone, David M. Aanensen, Silvia Argimon, Marta Mollerach
Summary: This study conducted whole-genome sequencing of 190 CC30-MRSA strains in Argentina, revealing 4 major clades with ARG-4 being the most prevalent and geographically disseminated. This clade was characterized by specific mobile genetic elements and chromosomal mutations that may have contributed to its virulence and success. The findings provide valuable genomic data for informing public health measures for infection prevention and control in Argentina.
Article
Multidisciplinary Sciences
Gita G. Paskerova, Tatiana S. Miroliubova, Andrea Valigurova, Jan Janouskovec, Magdalena Kovacikova, Andrei Diakin, Yuliya Ya. Sokolova, Kirill V. Mikhailov, Vladimir V. Aleoshin, Timur G. Simdyanov
Summary: This study provides the first detailed description of the fine morphology of aseptate eugregarines, demonstrating that their attachment organelles structurally resemble epimerites in other eugregarines. Phylogenetic analyses based on ribosomal DNA sequences confirm the independent branching of the Polyrhabdina clade within eugregarines, supporting the hypothesis that the epimerite is a synapomorphic innovation. As a result, the family Polyrhabdinidae is resurrected, a new family Trollidiidae is erected, and the characteristics of P. pygospionis, as well as the diagnoses of the genus and families, are re-described and revised.
Article
Ecology
Dario Karmeinski, Karen Meusemann, Jessica A. Goodheart, Michael Schroedl, Alexander Martynov, Tatiana Korshunova, Heike Waegele, Alexander Donath
Summary: The study aimed to understand the evolutionary history of soft-bodied cladobranch sea slugs by generating new transcriptome data for 19 species. Through assembling all transcriptomes using six different assemblers, four different supermatrices were created to infer statistically robust maximum-likelihood trees, with all analyses supporting major splits and phylogenetic relationships at the family level. The position of Embletonia pulchra remains a challenge, with the quartet mapping results indicating confounding signal in the data affecting its inferred position.
BMC ECOLOGY AND EVOLUTION
(2021)
Article
Ecology
T. C. Mathers, R. L. Hammond, R. A. Jenner, B. Haenfling, J. Atkins, A. Gomez
Article
Evolutionary Biology
Stephane A. P. Derocles, Manuel Plantegenest, Jean-Yves Rasplus, Alexia Marie, Darren M. Evans, David H. Lunt, Anne Le Ralec
SYSTEMATIC ENTOMOLOGY
(2016)
Article
Ecology
Darren M. Evans, James J. N. Kitson, David H. Lunt, Nigel A. Straw, Michael J. O. Pocock
FUNCTIONAL ECOLOGY
(2016)
Article
Evolutionary Biology
Amir Szitenberg, Soyeon Cha, Charles H. Opperman, David M. Bird, Mark L. Blaxter, David H. Lunt
GENOME BIOLOGY AND EVOLUTION
(2016)
Article
Marine & Freshwater Biology
Javier Montero-Pau, Manuel Serra, Africa Gomez
Article
Biochemistry & Molecular Biology
James J. N. Kitson, Christoph Hahn, Richard J. Sands, Nigel A. Straw, Darren M. Evans, David H. Lunt
Article
Entomology
Callum J. Macgregor, James J. N. Kitson, Richard Fox, Christoph Hahn, David H. Lunt, Michael J. O. Pocock, Darren M. Evans
ECOLOGICAL ENTOMOLOGY
(2019)
Article
Marine & Freshwater Biology
Javier Pinochet, Joaquin Dominguez, Evelyn Neira, Camila Rojas, Esteban Acuna, Juan M. Cancino, Antonio Brante
MARINE ECOLOGY-AN EVOLUTIONARY PERSPECTIVE
(2018)
Article
Multidisciplinary Sciences
Lluis Franch-Gras, Christoph Hahn, Eduardo M. Garcia-Roger, Maria Jose Carmona, Manuel Serra, Africa Gomez
SCIENTIFIC REPORTS
(2018)
Article
Biochemistry & Molecular Biology
Stephane A. P. Derocles, David H. Lunt, Sophie C. F. Berthe, Paul C. Nichols, Ellen D. Moss, Darren M. Evans
Article
Multidisciplinary Sciences
Javier Montero-Pau, Africa Gomez, Manuel Serra
Article
Evolutionary Biology
Joshua J. Faber-Hammond, Etienne Bezault, David H. Lunt, Domino A. Joyce, Suzy C. P. Renn
GENOME BIOLOGY AND EVOLUTION
(2019)
Article
Multidisciplinary Sciences
Eva Tarazona, Christoph Hahn, Lluis Franch-Gras, Eduardo M. Garcia-Roger, Maria Jose Carmona, Africa Gomez
SCIENTIFIC REPORTS
(2019)
Article
Entomology
Dimitrios Petsopoulos, David H. Lunt, James R. Bell, James J. N. Kitson, Larissa Collins, Neil Boonham, Ramiro Morales-Hojas, Darren M. Evans
ECOLOGICAL ENTOMOLOGY
(2021)
Article
Multidisciplinary Sciences
Graham S. Sellers, Daniel C. Jeffares, Bex Lawson, Tom Prior, David H. Lunt
Summary: Root-knot nematodes are important plant pathogens with economic significance, and their accurate taxonomic identification can be challenging due to their polyploid nature. This study demonstrates a low-cost and scalable genome sequencing approach for individual nematodes, enabling reliable species-level identification using Kraken 2. This method provides a feasible solution for accurate diagnostics of RKN species.
Article
Biochemistry & Molecular Biology
Markus Osaland Fjelde, Einar Timdal, Reidar Haugan, Mika Bendiksby
Summary: This study investigated the taxonomy of the crustose lichen genus Calvitimela using molecular phylogenetics and morphological observations. The results revealed evolutionarily old and deeply divergent lineages within Calvitimela, with overlapping morphological characters between different subgenera. Chemical characters were informative at the level of subgenera but often homoplastic at the species level. A practical taxonomy of Calvitimela was proposed based on these findings.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2024)
Article
Biochemistry & Molecular Biology
Bo-Yang Shi, Da Pan, Kang-Qin Zhang, Tian-Yu Gu, Darren C. J. Yeo, Peter K. L. Ng, Neil Cumberlidge, Hong-Ying Sun
Summary: This study investigates the evolutionary history and speciation mechanisms of montane potamids in the Hengduan Mountains Region. The results suggest that the vicariance events of these crabs are correlated with the emergence of sky islands due to the uplift of the mountains. The mountain ridges provided corridors for their dispersal and past climatic conditions played a crucial role in their evolutionary history. The mechanisms isolating sky islands are reinforced by the climatic features of dry-hot valleys and continue to affect local diversification.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2024)
Article
Biochemistry & Molecular Biology
Attila Nemeth, Edvard Mizsei, Levente Laczko, David Czaban, Zsolt Hegyeli, Szabolcs Lengyel, Gabor Csorba, Gabor Sramko
Summary: Species delimitation of European blind mole rats is challenging due to their small morphological differences and complex chromosomal evolution. This study provides a comprehensive framework to improve understanding of their evolutionary history and revise their taxonomy. The results reveal the presence of multiple superspecies and species, with distinct geographic patterns and rapid chromosomal evolution.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2024)
Article
Biochemistry & Molecular Biology
Ying Qi, Zhaoyan Zhong, Xu Liu, Xing He, Yadong Zhou, Lili Zhang, Chong Chen, Katrin Linse, Jian-Wen Qiu, Jin Sun
Summary: This study investigates the phylogenetic relationships among patellogastropod families using mitochondrial and phylogenomic data. The results show that the mitochondrial phylogeny recovers monophyly of most families, but the relationships among families are still contentious. However, a more robust family-level topology consistent with morphology is achieved by phylogenomics. Additionally, the mainly deep-water families are found to be monophyletic, suggesting a single colonization of the deep water during the Jurassic.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2024)
Article
Biochemistry & Molecular Biology
Yu-Jie Shi, Jin -Liang Huang, Jia-Xuan Mi, Jing Li, Fan-Yu Meng, Yu Zhong, Fang He, Fei -Fei Tian, Fan Zhang, Liang-Hua Chen, Han-Bo Yang, Hong-Lin Hu, Xue-Qin Wan
Summary: Despite numerous studies on hybrid speciation, our understanding of this process remains limited. In this study, we conducted an 18-year systematic investigation on Populus taxa on the Qinghai-Tibet Plateau and discovered three new taxa that originated from distant hybridization between two different sections. These hybrid taxa demonstrate greater ecological adaptability than their ancestral species due to heterosis. We propose a hybrid speciation process model that can explain important evolutionary concerns.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2024)
Article
Biochemistry & Molecular Biology
Anna Cho, Denis Tikhonenkov, Gordon Lax, Kristina I. Prokina, Patrick J. Keeling
Summary: Unlike conspicuous ochrophytes, many small and overlooked flagellates belonging to basally branching stramenopiles remain poorly characterized at the cellular or genomic level. This study describes four new species, including two new genera, of sediment-dwelling MAST-6 and provides updated phylogenomic tree of stramenopiles. The characterization of these flagellates is important due to their phylogenetic diversity and abundance in various environments.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2024)
Article
Biochemistry & Molecular Biology
Tian-Tian Xue, Steven B. Janssens, Bin-Bin Liu, Sheng-Xiang Yu
Summary: Phylogenomic conflicts are widespread among genomic data, with most previous studies primarily focusing on nuclear datasets instead of organellar genomes. In this study, we investigated the phylogenetic conflicts within and between plastid and mitochondrial genomes using Potentilla as a case study. We found that both plastid and mitochondrial genomes divided Potentilla into eight highly supported clades, with two newly identified clades. Our results demonstrate that mitochondrial genes can fully resolve phylogenetic relationships among major clades of Potentilla and are not always linked with plastomes in evolutionary history.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2024)
Article
Biochemistry & Molecular Biology
Alexandra A. Grossi, Chunpo Tian, Mengjiao Ren, Fasheng Zou, Daniel R. Gustafsson
Summary: This study suggests that the coevolutionary relationships between chewing lice, endosymbiotic bacteria, and birds are not independent, but the patterns vary depending on the analysis method used. Additionally, louse host-switching does not seem to affect bacterial strains.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2024)
Article
Biochemistry & Molecular Biology
Ingrid Olivares, Sergio Tusso, Maria Jose Sanin, Marylaure de La Harpe, Oriane Loiseau, Jonathan Rolland, Nicolas Salamin, Michael Kessler, Kentaro K. Shimizu, Margot Paris
Summary: Traditionally, differences between species have been associated with morphological variation. However, the discovery of cryptic diversity suggests that the evolution of distinct lineages can occur without morphological differences. Through genetic analysis, we found that a tropical montane plant lineage is composed of numerous unrecognized genetic groups that are not morphologically distinct. Geographic distance and topography play a crucial role in determining the genetic divergence of these groups.
MOLECULAR PHYLOGENETICS AND EVOLUTION
(2024)
