MAPK feedback encodes a switch and timer for tunable stress adaptation in yeast

Encoding and Decoding Cellular Information through Signaling Dynamics

(2013) Jeremy E. Purvis et al.   CELL

Profiling of Ubiquitin-like Modifications Reveals Features of Mitotic Control

(2013) Yifat Merbl et al.   CELL

Dynamic Ubiquitination of the Mitogen-activated Protein Kinase Kinase (MAPKK) Ste7 Determines Mitogen-activated Protein Kinase (MAPK) Specificity

(2013) Jillian H. Hurst et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Severe osmotic compression triggers a slowdown of intracellular signaling, which can be explained by molecular crowding

(2013) A. Miermont et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systematic Identification of Signal-Activated Stochastic Gene Regulation

(2013) G. Neuert et al.   SCIENCE

Response to Hyperosmotic Stress

(2012) H. Saito et al.   GENETICS

Cellular Memory of Acquired Stress Resistance in Saccharomyces cerevisiae

(2012) Q. Guan et al.   GENETICS

Flow Cytometry for Age Assessment of a Yeast Population and its Application in Beer Fermentations

(2012) Michal Kuřec et al.   JOURNAL OF THE INSTITUTE OF BREWING

Frequency-Modulated Pulses of ERK Activity Transmit Quantitative Proliferation Signals

(2012) John G. Albeck et al.   MOLECULAR CELL

Modelling reveals novel roles of two parallel signalling pathways and homeostatic feedbacks in yeast

(2012) Jörg Schaber et al.   Molecular Systems Biology

Synaptic amplification by dendritic spines enhances input cooperativity

(2012) Mark T. Harnett et al.   NATURE

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Composite low affinity interactions dictate recognition of the cyclin-dependent kinase inhibitor Sic1 by the SCFCdc4 ubiquitin ligase

(2012) X. Tang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

p53 Dynamics Control Cell Fate

(2012) J. E. Purvis et al.   SCIENCE

Checkpoints in a Yeast Differentiation Pathway Coordinate Signaling during Hyperosmotic Stress

(2012) Michal J. Nagiec et al.   PLoS Genetics

Two MAPK-signaling pathways are required for mitophagy inSaccharomyces cerevisiae

(2011) Kai Mao et al.   JOURNAL OF CELL BIOLOGY

Signal-dependent dynamics of transcription factor translocation controls gene expression

(2011) Nan Hao et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Transient Activation of the HOG MAPK Pathway Regulates Bimodal Gene Expression

(2011) S. Pelet et al.   SCIENCE

Protein Arginine Methyltransferase 5 Regulates ERK1/2 Signal Transduction Amplitude and Cell Fate Through CRAF

(2011) P. Andreu-Perez et al.   Science Signaling

Systematic Analysis of Essential Genes Reveals Important Regulators of G Protein Signaling

(2010) Steven D. Cappell et al.   MOLECULAR CELL

Dynamic Control of Yeast MAP Kinase Network by Induced Association and Dissociation between the Ste50 Scaffold and the Opy2 Membrane Anchor

(2010) Katsuyoshi Yamamoto et al.   MOLECULAR CELL

The scaffold protein Ste5 directly controls a switch-like mating decision in yeast

(2010) Mohan K. Malleshaiah et al.   NATURE

YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface

(2010) D. Abdulrehman et al.   NUCLEIC ACIDS RESEARCH

Improved Phos-tag SDS-PAGE under neutral pH conditions for advanced protein phosphorylation profiling

(2010) Eiji Kinoshita et al.   PROTEOMICS

A Systems-Level Analysis of Perfect Adaptation in Yeast Osmoregulation

(2009) Dale Muzzey et al.   CELL

Coordinated regulation of autophagy by p38α MAPK through mAtg9 and p38IP

(2009) Jemma L Webber et al.   EMBO JOURNAL

Dynamic and complex transcription factor binding during an inducible response in yeast

(2009) L. Ni et al.   GENES & DEVELOPMENT

Unlimited multistability in multisite phosphorylation systems

(2009) Matthew Thomson et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Tuning the Activation Threshold of a Kinase Network by Nested Feedback Loops

(2009) Q. A. Justman et al.   SCIENCE

Dynamic Signaling in the Hog1 MAPK Pathway Relies on High Basal Signal Transduction

(2009) J. Macia et al.   Science Signaling

Signal Transduction: Turning a Switch into a Rheostat

(2008) Lee Bardwell   CURRENT BIOLOGY

Membrane Localization of Scaffold Proteins Promotes Graded Signaling in the Yeast MAP Kinase Cascade

(2008) Satoe Takahashi et al.   CURRENT BIOLOGY

Control of MAPK Specificity by Feedback Phosphorylation of Shared Adaptor Protein Ste50

(2008) Nan Hao et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Regulation of Cell Signaling Dynamics by the Protein Kinase-Scaffold Ste5

(2008) Nan Hao et al.   MOLECULAR CELL

On the cell cycle and its switches

(2008) Silvia D. M. Santos et al.   NATURE

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Stress resistance and signal fidelity independent of nuclear MAPK function

(2008) P. J. Westfall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Scaffold Makes the Switch

(2008) H. G. Dohlman   Science Signaling

Dose-to-Duration Encoding and Signaling beyond Saturation in Intracellular Signaling Networks

(2008) Marcelo Behar et al.   PLoS Computational Biology