Article
Biochemical Research Methods
Adrian L. Hauber, Marcus Rosenblatt, Jens Timmer
Summary: Ordinary differential equations are commonly used for mathematical modeling in biological systems. Identifying cell-type specific mechanisms is crucial in building useful models and understanding biological processes. Existing regularization techniques are inconsistent when analyzing more than two cell types. To address this, the paper proposes incorporating the clustered LASSO into ordinary differential equation modeling by penalizing pairwise differences of fold-change parameters. This approach renders the results independent of the reference cell type. The paper demonstrates the performance of the method using realistic biological models and synthetic data, and also applies it to published biological models with experimental data.
PLOS COMPUTATIONAL BIOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Naomi C. Bosch, Lena-Marie Martin, Caroline J. Voskens, Carola Berking, Barbara Seliger, Gerold Schuler, Niels Schaft, Jan Doerrie
Summary: NK cells play a crucial role in tumor cell rejection, and activating NK cells along with other immune cells can lead to a more comprehensive cellular response. Dendritic cells are capable of enhancing immune responses by activating NK cells and producing IL-12, while IL-15 serves as an important NK cell activator as well.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Immunology
Ching-Lien Wu, Julien Caumartin, Giada Amodio, Francois Anna, Maria Loustau, Silvia Gregori, Pierre Langlade-Demoyen, Joel LeMaoult
Summary: Invariant Natural Killer T (iNKT) cells, when activated by exogenic glycolipid antigen, can release cytokines rapidly to enhance anti-tumor activity. The presence of the tolerogenic molecule HLA-G in humans may impact the function of iNKT cells, potentially affecting the outcome of clinical trials.
FRONTIERS IN IMMUNOLOGY
(2021)
Review
Multidisciplinary Sciences
Mizuki Yamamoto, Jin Gohda, Taishin Akiyama, Jun-ichiro Inoue
Summary: NF-kappa B is a transcription factor that plays crucial roles in cell proliferation, differentiation, and apoptosis, as well as in various physiological processes such as development, organogenesis, immunity, inflammation, and neurological functions. TRAF family proteins are key players in the signaling pathways activating NF-kappa B, revealing the significance of ubiquitin in NF-kappa B signaling and other biological systems. The discovery of the nonproteolytic functions of ubiquitin in cellular signaling has revolutionized the field of ubiquitin studies.
PROCEEDINGS OF THE JAPAN ACADEMY SERIES B-PHYSICAL AND BIOLOGICAL SCIENCES
(2021)
Article
Immunology
Mariko Hanaoka, Eisuke Domae
Summary: Candida albicans is a commensal fungus that can cause lethal systemic infection when host defense is compromised. Candidalysin, produced by the fungus, contributes to mucosal tissue damage and the establishment of systemic infection. IL-1 alpha, another component of candidalysin-mediated initial epithelial activation, plays a synergistic role with EGFR ligands in the activation of oral epithelial cells.
INTERNATIONAL IMMUNOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Miaomiao Qi, Xiang Liu, Ying Zhou, Haoyu Wang, Ying Zhao, Jing Ren, Jin Xiang
Summary: BBR is a modulator of GPER1 that inhibits the viability, migration, and autophagy of MDA-MB-231 cells, dependent on estrogen levels. It binds to GPER1 directly, changes its structure, and inhibits the NF-κB pathway, showing anti-cancer effects.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Immunology
Arthur A. A. Cross-Najafi, Kristine Farag, Abdulkadir Isidan, Wei Li, Wenjun Zhang, Zhansong Lin, Julia R. R. Walsh, Kevin Lopez, Yujin Park, Nancy G. G. Higgins, David K. C. Cooper, Burcin Ekser, Ping Li
Summary: Natural killer (NK) cells play a key role in immune rejection in solid organ transplantation. In this study, the expression of inhibitory ligands (HLA-E and HLA-G) on genetically modified porcine endothelial cells was found to significantly reduce NK cell activation and improve xenograft survival. Co-expression of HLA-E and HLA-G on pig cells provided superior inhibition compared to individual expression, leading to decreased human NK cell activation. This in vitro study demonstrates the potential of genetic engineering of pigs to prevent human NK cell-mediated rejection.
FRONTIERS IN IMMUNOLOGY
(2023)
Article
Cell Biology
Dianbo Long, Yiyang Xu, Guping Mao, Ruobing Xin, Zengfa Deng, Hongyi Liao, Zhiwen Li, Zhi Yang, Baoxi Yu, Zhijian Yang, Aishan He, Ziji Zhang, Yan Kang
Summary: tRNA-derived fragments (tRFs) have been shown to play important roles in cell metabolism by regulating gene expression. This study investigates the role of tRFs in the cellular metabolism of the anterior cruciate ligament (ACL). The findings reveal that TRF365 regulates ACL cell metabolism by targeting IKBKB.
CELL DEATH DISCOVERY
(2022)
Article
Microbiology
Elisenda Alari-Pahissa, Michelle Ataya, Ilias Moraitis, Miriam Campos-Ruiz, Mireia Altadill, Aura Muntasell, Anna Moles, Miguel Lopez-Botet
Summary: The study reveals that NK cells in combination with anti-EBV antibodies can eliminate the virus attached to the surface of B cells, reducing infection without killing the cells.
Article
Biochemistry & Molecular Biology
Marwa M. Abu-Serie, Noha H. Habashy
Summary: Relapse and drug resistance in leukemia can be overcome by targeting leukemia-initiating stem/progenitor cells (LICs). This study evaluated the anti-leukemic effect of royal jelly (RJ) components, particularly MRJP2, which showed higher growth inhibitory activity against leukemia cell lines and suppressed oncogenes associated with LICs. Furthermore, MRJP2 demonstrated greater apoptosis-inducing activity and inhibited metastasis markers and LIC survival. These findings suggest that MRJP2 can be a promising therapeutic agent for both myeloid and lymphoid leukemia.
Article
Integrative & Complementary Medicine
Li Caihong, Shi Jinlian, Huang Bo, Ding Hang, Lin Hanguang, Zeng Jincheng, Zhao Yang, Luo Guoqing
Summary: DMY inhibits the proliferation and colony formation of nasopharyngeal carcinoma CNE-2 cells, induces apoptosis in a dose and time-dependent manner, and suppresses NF-κB activation to exert antitumor effects.
JOURNAL OF TRADITIONAL CHINESE MEDICINE
(2021)
Review
Immunology
Zilong Wang, Chucun Fang, Mengting Yao, Dongwen Wu, Maga Chen, Tianting Guo, Jianwen Mo
Summary: Venous thromboembolism is a common and costly health problem. Deep-vein thrombosis can cause severe consequences. Inflammatory response is considered an important pathway for triggering venous thromboembolism, and regulating it through the NF-kappa B signaling pathway may provide new solutions for prevention and treatment of thrombosis.
FRONTIERS IN IMMUNOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Chung-Chi Yang, Yen-Ling Hung, Wen-Chin Ko, Yi-Ju Tsai, Jia-Feng Chang, Cher-Wei Liang, Der-Chen Chang, Chi-Feng Hung
Summary: Neferine, a compound isolated from lotus seeds, has shown potential as an alternative treatment for atopic dermatitis by inhibiting cytokine and chemokine expression and reducing phosphorylation of signaling pathways.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Cell Biology
Zhengkui Zhang, Xiangjun Kong, Maarten A. Ligtenberg, Susan E. Van Hal-van Veen, Nils L. Visser, Beaunelle de Bruijn, Kelly Stecker, Pim W. van der Helm, Thomas Kuilman, Esmee P. Hoefsmit, David W. Vredevoogd, Georgi Apriamashvili, Beau Baars, Emile E. Voest, Sjoerd Klarenbeek, Maarten Altelaar, Daniel S. Peeper
Summary: The study reveals that inhibiting RNF31 can increase the susceptibility of cancer cells to both natural killer cells and adaptive CD8(+) T cells, thus enhancing the tumor's sensitivity to immune elimination. This effect is mediated by tumor necrosis factor, leading to the loss of A20 and non-canonical IKK complexes from the TNF receptor complex. Therefore, targeting RNF31 inhibition could be a promising pharmacological approach for immunotherapy-refractory cancers.
CELL REPORTS MEDICINE
(2022)
Article
Chemistry, Analytical
Kanyu Xun, Yue Sun, Qiang Zhang, Nachuan Wen, Zhimin Wang, Liping Qiu, Weihong Tan
Summary: This study developed a new nanoplatform using streptavidin as a carrier to directly analyze and manipulate the activity of target proteins. By incorporating a photoresponsive module, the nanoplatform was able to control the nuclear translocation behavior of active proteins and regulate downstream signaling events.
ANALYTICAL CHEMISTRY
(2022)
Article
Multidisciplinary Sciences
Tania C. d'Almeida, Ibrahim Sadissou, Mermoz Sagbohan, Jacqueline Milet, Euripide Avokpaho, Laure Gineau, Audrey Sabbagh, Kabirou Moutairou, Eduardo A. Donadi, Benoit Favier, Cedric Pennetier, Thierry Baldet, Nicolas Moiroux, Edgardo Carosella, Philippe Moreau, Nathalie Rouas-Freiss, Gilles Cottrell, David Courtin, Andre Garcia
SCIENTIFIC REPORTS
(2019)
Article
Parasitology
Euripide Avokpaho, Tania C. d'Almeida, Ibrahim Sadissou, Leonidas Tokplonou, Rafiou Adamou, Paulin Sonon, Jacqueline Milet, Gilles Cottrell, Amandine Mondiere, Achille Massougbodji, Kabirou Moutairou, Eduardo A. Donadi, Celso Teixeira Mendes Junior, Benoit Favier, Edgardo Carosella, Philippe Moreau, Nathalie Rouas-Freiss, Andre Garcia, David Courtin
Article
Medicine, General & Internal
Charlotte Voisin, Ghislaine Cauchois, Loic Reppel, Caroline Laroye, Laetitia Louarn, Chantal Schenowitz, Paulin Sonon, Isabelle Poras, Valentine Wang, Edgardo D. Carosella, Nadia Benkirane-Jessel, Philippe Moreau, Nathalie Rouas-Freiss, Daniele Bensoussan, Celine Huselstein
JOURNAL OF CLINICAL MEDICINE
(2020)
Article
Immunology
Bruna Cristina Bertol, Fabricio Cesar Dias, Guilherme Debortoli, Bruno Mendes Souto, Priscila Baptista Mendonca, Roberta Chaves Araujo, Rodrigo Carvalho Santana, Leandra Naira Zambelli Ramalho, Erick Cruz Castelli, Ana de Lourdes Candolo Martinelli, Celso Teixeira Mendes-Junior, Edgardo Delfino Carosella, Eduardo Antonio Donadi, Philippe Moreau
CLINICAL IMMUNOLOGY
(2020)
Review
Immunology
Sylvain Meunier, Marie de Bourayne, Moustafa Hamze, Aurelien Azam, Evelyne Correia, Catherine Menier, Bernard Maillere
FRONTIERS IN IMMUNOLOGY
(2020)
Article
Infectious Diseases
Paulin Sonon, Leonidas Tokplonou, Ibrahim Sadissou, Kuumaate K. G. M'po, Sonya S. C. Glitho, Privat Agniwo, Moudachirou Ibikounle, Andreia S. Souza, Juliana Doblas Massaro, Daniel Gonzalez, Theophile Tchegninougbo, Aurele Ayitchedji, Achille Massougbodji, Philippe Moreau, Andre Garcia, Jacqueline Milet, Audrey Sabbagh, Celso T. Mendes-Junior, Kabirou A. Moutairou, Erick C. Castelli, David Courtin, Eduardo A. Donadi
Summary: This study evaluated the variability of HLA-E/-F/-G genes in relation to malaria in Beninese children. The findings suggest that children carrying the G allele in the HLA-F gene are more prone to asymptomatic P.f. episodes, while those carrying the HLA-G-UTR-03 haplotype have an increased risk for symptomatic P.f. episodes. The results indicate potential associations between HLA-F gene and differential expression profiles of immune-modulatory molecules, as well as regulatory sites at the HLA-G 3'UTR and host humoral response against P.f.
INFECTION GENETICS AND EVOLUTION
(2021)
Article
Multidisciplinary Sciences
Sabrine Dhouioui, Nadia Boujelbene, Hanen Chelbi, Ines Zemni, Ines Ben Safta, Hadda-Imene Ouzari, Amel Mezlini, Abdel Halim Harrath, Vera Rebmann, Ines Zidi
Summary: The objective of this study was to investigate the involvement of HLA-G in colorectal cancer (CRC) as a prognostic factor in the Tunisian population. The study found that both soluble HLA-G (sHLA-G) and HLA-G linked to extracellular vesicles (HLA-G (EV)) were present in high concentrations in CRC patients compared to healthy individuals. Additionally, the study found that sHLA-G was able to decrease the production of cytokines by stimulated T lymphocytes, while HLA-G (EV) downregulated the release of IL-6 by stimulated T lymphocytes. The study concludes that HLA-G could be a valuable diagnostic tool for colorectal cancer.
JOURNAL OF KING SAUD UNIVERSITY SCIENCE
(2022)
Article
Integrative & Complementary Medicine
Souhir Sallemi, Abdelmalek Lekired, Nedra Korbi, Ilhem Saadouli, Ameur Cherif, Ines Zidi, Naouel Klibi, Hadda-Imene Ouzari, Amor Mosbah
Summary: This study provides the first investigation of the fungal community in Tunisian propolis and identifies several fungal strains with antibacterial properties.
EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE
(2022)
Article
Immunology
Kalthoum Tizaoui, Maroua Jalouli, Hadda-imene Ouzari, Abdel Halim Harrath, Roberta Rizzo, Nadia Boujelbene, Ines Zidi
Summary: This study used meta-analysis to identify an association between HLA-G gene polymorphisms and breast cancer susceptibility. The Del and C variants were found to be significant risk factors. Furthermore, circulating sHLA-G levels were significantly higher in breast cancer patients.
IMMUNOLOGY LETTERS
(2022)
Article
Immunology
Celia Dechavanne, Odilon Nouatin, Rafiou Adamou, Sofie Edslev, Anita Hansen, Florian Meurisse, Ibrahim Sadissou, Erasme Gbaguidi, Jacqueline Milet, Gilles Cottrell, Laure Gineau, Audrey Sabbagh, Achille Massougbodji, Kabirou Moutairou, Eduardo A. Donadi, Edgardo D. Carosella, Philippe Moreau, Ed Remarque, Michael Theisen, Nathalie Rouas-Freiss, Andre Garcia, Benoit Favier, David Courtin
Summary: Placental malaria may increase susceptibility of infants to malaria. Infants born to women with placental malaria are more likely to develop symptomatic malaria and have lower expression of inhibitory receptor LILRB2. Additionally, these infants may have impaired immune response during active infection.
FRONTIERS IN IMMUNOLOGY
(2022)
Article
Immunology
Khedidja Tahar Djebbar, Mounia Allouache, Salim Kezzal, Fouzia Benguerguoura, Chafia TouilBoukoffa, Ines Zidi, Rachida Raache, Hadda-Imene Ouzari
Summary: This study evaluated the potency of the pertussis vaccine in Algeria using the mouse protection test. The research found that the potency evaluation conducted at the Pasteur Institute of Algeria was effective in assessing the quality of the vaccine and highlighted the importance of this potency for quality assurance.
Article
Multidisciplinary Sciences
Sabrine Dhouioui, Nadia Boujelbene, Hadda-imene Ouzari, Kalthoum Tizaoui, Ines Zidi
Summary: The meta-analysis shows that HLA-G plays a significant role in digestive cancers. The HLA-G 14-bp I/D polymorphism is associated with HCC in patients with concomitant HBV/HCV viral infections. Increased sHLA-G indicates a poor prognosis for digestive cancer patients.
Review
Immunology
Cinthia C. Alves, Thais Arns, Maria L. Oliveira, Philippe Moreau, Dinler A. Antunes, Erick C. Castelli, Celso T. Mendes-Junior, Silvana Giuliatti, Eduardo A. Donadi
Summary: In this study, we utilized computational and atomistic approaches to evaluate the structure and dynamics of HLA-G isoforms, the impact of missense mutations at LILRB1/2 genes, and the differential binding of HIF1 to HREs at the HLA-G gene. We also discovered new findings including the instability of HLA-G6 isoforms, the impact of amino acid exchanges at the intracellular domain on HLA-G binding, and the higher affinity of HREs with a guanine at the third position for HIF1. These results shed light on the functional aspects of HLA-G and provide alternative tools to experimental physical methodologies.
Article
Immunology
Nathalie Rouas-Freiss, Philippe Moreau, Joel LeMaoult, Bela Papp, Diana Tronik-Le Roux, Edgardo D. Carosella
Summary: The non-classical HLA class I molecule HLA-G plays a crucial role at the maternal-fetal interface, affecting trophoblast invasion, uterine vascular remodeling, and the local immunosuppressive state. Understanding the effects of HLA-G on decidual leucocytes and stromal cells, its interaction with receptors, as well as the impact of polymorphism on pregnancy disorders is essential in reproduction.
Article
Multidisciplinary Sciences
Sabrine Dhouioui, Nadia Boujelbene, Hadda-Imene Ouzari, Kalthoum Tizaoui, Ines Zidi
Summary: This meta-analysis found no association between HLA-G 14-bp I/D and digestive cancers. However, in HBV/HCV positive hepato-cellular cancer patients, a significant association of HLA-G 14-bp I/D with disease initiation was reported. Overall analysis showed significantly increased sHLA-G in patients, and in Asian gastric cancer patients, sHLA-G was significantly increased in higher grade tumors.