De novo transcriptome characterization of Lilium ‘Sorbonne’ and key enzymes related to the flavonoid biosynthesis

Flower color diversity revealed by differential expression of flavonoid biosynthetic genes and flavonoid accumulation in herbaceous peony (Paeonia lactiflora Pall.)

(2012) Daqiu Zhao et al.   MOLECULAR BIOLOGY REPORTS

Performance comparison of benchtop high-throughput sequencing platforms

(2012) Nicholas J Loman et al.   NATURE BIOTECHNOLOGY

BAR expressolog identification: expression profile similarity ranking of homologous genes in plant species

(2012) Rohan V. Patel et al.   PLANT JOURNAL

Functional analyses of AGAMOUS family members in Nicotiana benthamiana clarify the evolution of early and late roles of C-function genes in eudicots

(2012) Chloé Fourquin et al.   PLANT JOURNAL

Transcriptome of Protoplasts Reprogrammed into Stem Cells in Physcomitrella patens

(2012) Lihong Xiao et al.   PLoS One

Global Transcriptome Analysis of the Scorpion Centruroides noxius: New Toxin Families and Evolutionary Insights from an Ancestral Scorpion Species

(2012) Martha Rendón-Anaya et al.   PLoS One

De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)

(2012) Xue-Mei Zhang et al.   PLoS One

De novo assembled expressed gene catalog of a fast-growing Eucalyptus tree produced by Illumina mRNA-Seq

(2011) Eshchar Mizrachi et al.   BMC GENOMICS

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas)

(2011) Zhangying Wang et al.   BMC GENOMICS

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

(2011) Barbara Feldmeyer et al.   BMC GENOMICS

Generation and analysis of expressed sequence tags (ESTs) for marker development in yam (Dioscorea alata L.)

(2011) Satya S Narina et al.   BMC GENOMICS

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

(2011) José Blanca et al.   BMC GENOMICS

Development of expressed sequence tag derived-simple sequence repeats in the genus Lilium

(2011) Sung-Il Lee et al.   Genes & Genomics

Anthocyanin Accumulation and Expression of Anthocyanin Biosynthetic Genes in Radish (Raphanus sativus)

(2011) Nam Il Park et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Identification of Two Anthocyanidin Reductase Genes and Three Red-Brown Soybean Accessions with Reduced Anthocyanidin Reductase 1 mRNA, Activity, and Seed Coat Proanthocyanidin Amounts

(2011) Nik Kovinich et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The transcription factor LhMYB12 determines anthocyanin pigmentation in the tepals of Asiatic hybrid lilies (Lilium spp.) and regulates pigment quantity

(2011) Masumi Yamagishi et al.   MOLECULAR BREEDING

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

De Novo Assembly of Expressed Transcripts and Global Analysis of the Phalaenopsis aphrodite Transcriptome

(2011) Chun-lin Su et al.   PLANT AND CELL PHYSIOLOGY

RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis

(2011) Zhihui Xia et al.   PLANT MOLECULAR BIOLOGY

Simultaneous post-transcriptional gene silencing of two different chalcone synthase genes resulting in pure white flowers in the octoploid dahlia

(2011) Sho Ohno et al.   PLANTA

Transcriptomics of the Bed Bug (Cimex lectularius)

(2011) Xiaodong Bai et al.   PLoS One

The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing

(2011) Da Cheng Hao et al.   PLoS One

Differential Expression of Anthocyanin Biosynthetic Genes in Relation to Anthocyanin Accumulation in the Pericarp of Litchi Chinensis Sonn

(2011) Yong-Zan Wei et al.   PLoS One

Post-Transcriptional Silencing of Flavonol Synthase mRNA in Tobacco Leads to Fruits with Arrested Seed Set

(2011) Monika Mahajan et al.   PLoS One

De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis

(2010) Chao Sun et al.   BMC GENOMICS

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

(2010) Thomas L Parchman et al.   BMC GENOMICS

Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types

(2010) Shaogui Guo et al.   BMC GENOMICS

RNA sequencing reveals the role of splicing polymorphisms in regulating human gene expression

(2010) E. Lalonde et al.   GENOME RESEARCH

Differential Expression of Flavonoid Biosynthesis Genes and Accumulation of Phenolic Compounds in Common Buckwheat (Fagopyrum esculentum)

(2010) Xiaohua Li et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Mining and validating grape (Vitis L.) ESTs to develop EST-SSR markers for genotyping and mapping

(2010) Hong Huang et al.   MOLECULAR BREEDING

Oriental hybrid lily Sorbonne homologue of LhMYB12 regulates anthocyanin biosyntheses in flower tepals and tepal spots

(2010) Masumi Yamagishi   MOLECULAR BREEDING

Two R2R3-MYB Genes, Homologs of Petunia AN2, Regulate Anthocyanin Biosyntheses in Flower Tepals, Tepal Spots and Leaves of Asiatic Hybrid Lily

(2010) Masumi Yamagishi et al.   PLANT AND CELL PHYSIOLOGY

Genetic mapping in Lilium: mapping of major genes and quantitative trait loci for several ornamental traits and disease resistances

(2010) Arwa Shahin et al.   PLANT BREEDING

Characterization of Expressed Sequence Tags from Flower Buds of Alpine Lilium formosanum using a Subtractive cDNA Library

(2010) Wei-Kuang Wang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Ectopic Expression of Apple F3'H Genes Contributes to Anthocyanin Accumulation in the Arabidopsis tt7 Mutant Grown Under Nitrogen Stress

(2010) Y. Han et al.   PLANT PHYSIOLOGY

Transcriptome Analysis of the Brown Planthopper Nilaparvata lugens

(2010) Jian Xue et al.   PLoS One

De Novo Transcriptome Sequencing in Anopheles funestus Using Illumina RNA-Seq Technology

(2010) Jacob E. Crawford et al.   PLoS One

Rapid transcriptome and proteome profiling of a non-model marine invertebrate, Bugula neritina

(2010) Hao Wang et al.   PROTEOMICS

Genetic Diversity and Genetic Structure Analysis of the Natural Populations of Lilium brownii from Guangdong, China

(2009) Yong-fang Huang et al.   BIOCHEMICAL GENETICS

Anthocyanin accumulation and expression pattern of anthocyanin biosynthesis genes in developing wheat coleoptiles

(2009) N. Ahmed et al.   BIOLOGIA PLANTARUM

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

(2009) Eli Meyer et al.   BMC GENOMICS

A New Family of Ferritin Genes from Lupinus luteus--Comparative Analysis of Plant Ferritins, Their Gene Structure, and Evolution

(2009) P. M. Strozycki et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing

(2009) Peter C. Bundock et al.   PLANT BIOTECHNOLOGY JOURNAL

Single nucleotide polymorphism (SNP) discovery in the polyploidBrassica napususing Solexa transcriptome sequencing

(2009) Martin Trick et al.   PLANT BIOTECHNOLOGY JOURNAL

Mutations in the cinnamate 4-hydroxylase gene impact metabolism, growth and development in Arabidopsis

(2009) Anthony L. Schilmiller et al.   PLANT JOURNAL

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Characterizing natural variation using next-generation sequencing technologies

(2009) Yoav Gilad et al.   TRENDS IN GENETICS

Chromosome diversity and evolution in Liliaceae

(2008) L. Peruzzi et al.   ANNALS OF BOTANY

Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing

(2008) Christopher W. Wheat   GENETICA

Applications of next-generation sequencing technologies in functional genomics

(2008) Olena Morozova et al.   GENOMICS

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing

(2008) J. CRISTOBAL VERA et al.   MOLECULAR ECOLOGY

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

(2008) M. Sultan et al.   SCIENCE

Isolation and expression analysis of flavonoid biosynthesis genes in evergreen azalea

(2008) Akira Nakatsuka et al.   SCIENTIA HORTICULTURAE