Predicting DNA-binding sites of proteins based on sequential and 3D structural information

PreDNA: accurate prediction of DNA-binding sites in proteins by integrating sequence and geometric structure information

(2013) Tao Li et al.   BIOINFORMATICS

An Ensemble Prognostic Model for Colorectal Cancer

(2013) Bi-Qing Li et al.   PLoS One

Computational prediction and analysis of protein γ-carboxylation sites based on a random forest method

(2012) Ning Zhang et al.   Molecular BioSystems

Prediction of active sites of enzymes by maximum relevance minimum redundancy (mRMR) feature selection

(2012) Yu-Fei Gao et al.   Molecular BioSystems

Prediction of Protein Domain with mRMR Feature Selection and Analysis

(2012) Bi-Qing Li et al.   PLoS One

Prediction of Protein Cleavage Site with Feature Selection by Random Forest

(2012) Bi-Qing Li et al.   PLoS One

Prediction of Protein-Protein Interaction Sites by Random Forest Algorithm with mRMR and IFS

(2012) Bi-Qing Li et al.   PLoS One

Predict and analyze S-nitrosylation modification sites with the mRMR and IFS approaches

(2011) Bi-Qing Li et al.   Journal of Proteomics

Eukaryotic Evolutionary Transitions Are Associated with Extreme Codon Bias in Functionally-Related Proteins

(2011) Nicholas J. Hudson et al.   PLoS One

APIS: accurate prediction of hot spots in protein interfaces by combining protrusion index with solvent accessibility

(2010) Jun-Feng Xia et al.   BMC BIOINFORMATICS

An accurate feature-based method for identifying DNA-binding residues on protein surfaces

(2010) Yi Xiong et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Using dynamics-based comparisons to predict nucleic acid binding sites in proteins: an application to OB-fold domains

(2009) Andrea Zen et al.   BIOINFORMATICS

Prediction of DNA-binding residues from protein sequence information using random forests

(2009) Liangjiang Wang et al.   BMC GENOMICS

Global Convergence of SMO Algorithm for Support Vector Regression

(2008) N. Takahashi et al.   IEEE TRANSACTIONS ON NEURAL NETWORKS

PSAIA - Protein Structure and Interaction Analyzer

(2008) Josip Mihel et al.   BMC STRUCTURAL BIOLOGY

An SMO Algorithm for the Potential Support Vector Machine

(2007) Tilman Knebel et al.   NEURAL COMPUTATION