Community genetics in the time of next-generation molecular technologies

Geographic divergence in a species-rich symbiosis: interactions between Monterey pines and ectomycorrhizal fungi

(2012) Jason D. Hoeksema et al.   ECOLOGY

Gene Discovery Using Mutagen-Induced Polymorphisms and Deep Sequencing: Application to Plant Disease Resistance

(2012) Y. Zhu et al.   GENETICS

The importance of individuals: intraspecific diversity of mycorrhizal plants and fungi in ecosystems

(2012) David Johnson et al.   NEW PHYTOLOGIST

Untargeted Metabolic Quantitative Trait Loci Analyses Reveal a Relationship between Primary Metabolism and Potato Tuber Quality

(2012) N. Carreno-Quintero et al.   PLANT PHYSIOLOGY

Fast Isogenic Mapping-by-Sequencing of Ethyl Methanesulfonate-Induced Mutant Bulks

(2012) B. Hartwig et al.   PLANT PHYSIOLOGY

A Secreted Effector Protein of Laccaria bicolor Is Required for Symbiosis Development

(2011) Jonathan M. Plett et al.   CURRENT BIOLOGY

Ectomycorrhizas and climate change

(2011) Brian J. Pickles et al.   Fungal Ecology

Genes to ecosystems: exploring the frontiers of ecology with one of the smallest biological units

(2011) Adam S. Wymore et al.   NEW PHYTOLOGIST

Sequencing the fungal tree of life

(2011) F. Martin et al.   NEW PHYTOLOGIST

Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities

(2011) R. Henrik Nilsson et al.   NEW PHYTOLOGIST

Forward from the crossroads of ecology and evolution

(2011) J. K. Rowntree et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Identification of quantitative trait loci affecting ectomycorrhizal symbiosis in an interspecific F1 poplar cross and differential expression of genes in ectomycorrhizas of the two parents: Populus deltoides and Populus trichocarpa

(2011) Jessy Labbé et al.   Tree Genetics & Genomes

Comparative analysis of fungal protein kinases and associated domains

(2010) Idit Kosti et al.   BMC GENOMICS

Spatial location dominates over host plant genotype in structuring an herbivore community

(2010) Ayco J. M. Tack et al.   ECOLOGY

Identifying wood-inhabiting fungi with 454 sequencing – what is the probability that BLAST gives the correct species?

(2010) Otso Ovaskainen et al.   Fungal Ecology

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Effect of poplar genotypes on mycorrhizal infection and secreted enzyme activities in mycorrhizal and non-mycorrhizal roots

(2010) P. E. Courty et al.   JOURNAL OF EXPERIMENTAL BOTANY

Ectomycorrhizal community structure of different genotypes of Scots pine under forest nursery conditions

(2010) Tomasz Leski et al.   MYCORRHIZA

Périgord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis

(2010) Francis Martin et al.   NATURE

Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils

(2010) Thomas L Turner et al.   NATURE GENETICS

Ten years of genetics and genomics: what have we achieved and where are we heading?

(2010) Edith Heard et al.   NATURE REVIEWS GENETICS

Ongoing coevolution in mycorrhizal interactions

(2010) Jason D. Hoeksema   NEW PHYTOLOGIST

Plant Peptides Govern Terminal Differentiation of Bacteria in Symbiosis

(2010) W. Van de Velde et al.   SCIENCE

The role of ectomycorrhizal communities in forest ecosystem processes: New perspectives and emerging concepts

(2010) Pierre-Emmanuel Courty et al.   SOIL BIOLOGY & BIOCHEMISTRY

A golden age for evolutionary genetics? Genomic studies of adaptation in natural populations

(2010) Nicola J. Nadeau et al.   TRENDS IN GENETICS

Characterization of PR-10 genes from eight Betula species and detection of Bet v 1 isoforms in birch pollen

(2009) Martijn F Schenk et al.   BMC PLANT BIOLOGY

Separating ontogenetic and environmental determination of resistance to herbivory in cottonwood

(2009) Liza M. Holeski et al.   ECOLOGY

Plant genetics shapes inquiline community structure across spatial scales

(2009) Gregory M. Crutsinger et al.   ECOLOGY LETTERS

Modified PCR methods for 3′ end amplification from serial analysis of gene expression (SAGE) tags

(2009) Wang-Jie Xu et al.   FEBS Journal

Quantitative Genetic Bases of Anthocyanin Variation in Grape (Vitis vinifera L. ssp. sativa) Berry: A Quantitative Trait Locus to Quantitative Trait Nucleotide Integrated Study

(2009) A. Fournier-Level et al.   GENETICS

Relationship between genotype and soil environment during colonization of poplar roots by mycorrhizal and endophytic fungi

(2009) Leszek Karliński et al.   MYCORRHIZA

Genetically based susceptibility to herbivory influences the ectomycorrhizal fungal communities of a foundation tree species

(2009) Christopher M. Sthultz et al.   NEW PHYTOLOGIST

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

From genes to ecosystems: an emerging synthesis of eco-evolutionary dynamics

(2009) Joseph K. Bailey et al.   NEW PHYTOLOGIST

Changes in arbuscular mycorrhizal fungal phenotypes and genotypes in response to plant species identity and phosphorus concentration

(2009) Martine Ehinger et al.   NEW PHYTOLOGIST

Land ahead: using genome scans to identify molecular markers of adaptive relevance

(2009) Rolf Holderegger et al.   Plant Ecology & Diversity

Harnessing genomics for evolutionary insights

(2009) Antonis Rokas et al.   TRENDS IN ECOLOGY & EVOLUTION

A Multiparent Advanced Generation Inter-Cross to Fine-Map Quantitative Traits in Arabidopsis thaliana

(2009) Paula X. Kover et al.   PLoS Genetics

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Next-generation genetics in plants

(2008) Magnus Nordborg et al.   NATURE

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

(2008) F. Martin et al.   NATURE

Disparate effects of plant genotypic diversity on foliage and litter arthropod communities

(2008) Gregory M. Crutsinger et al.   OECOLOGIA

Ectomycorrhizal colonization and intraspecific variation in growth responses of lodgepole pine

(2008) Justine Karst et al.   PLANT ECOLOGY

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Phylogenetic analysis of community assembly and structure over space and time

(2008) Brent C. Emerson et al.   TRENDS IN ECOLOGY & EVOLUTION