Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape

Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae)

(2011) Juan S Escobar et al.   BMC EVOLUTIONARY BIOLOGY

Post-glacial evolution of Panicum virgatum: centers of diversity and gene pools revealed by SSR markers and cpDNA sequences

(2011) Yunwei Zhang et al.   GENETICA

Multiplexed shotgun genotyping for rapid and efficient genetic mapping

(2011) P. Andolfatto et al.   GENOME RESEARCH

Genome-Wide Polymorphism and Comparative Analyses in the White-Tailed Deer (Odocoileus virginianus): A Model for Conservation Genomics

(2011) Christopher M. Seabury et al.   PLoS One

Error and Error Mitigation in Low-Coverage Genome Assemblies

(2011) Melissa J. Hubisz et al.   PLoS One

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Chloroplast Genome Variation in Upland and Lowland Switchgrass

(2011) Hugh A. Young et al.   PLoS One

Dihaploid Stocks of Switchgrass Isolated by a Screening Approach

(2010) Hugh A. Young et al.   BioEnergy Research

Genetic Diversity of Twelve Switchgrass Populations Using Molecular and Morphological Markers

(2010) Laura M. Cortese et al.   BioEnergy Research

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Effective Population Size, Gene Flow, and Species Status in a Narrow Endemic Sunflower, Helianthus neglectus, Compared to Its Widespread Sister Species, H. petiolaris

(2010) Andrew Raduski et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines

(2010) J. B. WHITTALL et al.   MOLECULAR ECOLOGY

Rapid Genomic Characterization of the Genus Vitis

(2010) Sean Myles et al.   PLoS One

Resolving postglacial phylogeography using high-throughput sequencing

(2010) K. J. Emerson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear

(2010) C. Lindqvist et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Association mapping of local climate-sensitive quantitative trait loci in Arabidopsis thaliana

(2010) Y. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hierarchical classification of switchgrass genotypes using SSR and chloroplast sequences: ecotypes, ploidies, gene pools, and cultivars

(2010) J. E. Zalapa et al.   THEORETICAL AND APPLIED GENETICS

Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data

(2010) M. Moragues et al.   THEORETICAL AND APPLIED GENETICS

Genome-size Variation in Switchgrass (Panicum virgatum): Flow Cytometry and Cytology Reveal Rampant Aneuploidy

(2010) Denise E. Costich et al.   Plant Genome

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

A Coastal Cline in Sodium Accumulation in Arabidopsis thaliana Is Driven by Natural Variation of the Sodium Transporter AtHKT1;1

(2010) Ivan Baxter et al.   PLoS Genetics

Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library

(2009) Cecilia Sánchez et al.   BMC GENOMICS

Estimation of Allele Frequencies From High-Coverage Genome-Sequencing Projects

(2009) M. Lynch   GENETICS

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Homoeologous nonreciprocal recombination in polyploid cotton

(2009) Armel Salmon et al.   NEW PHYTOLOGIST

Targeted single nucleotide polymorphism (SNP) discovery in a highly polyploid plant species using 454 sequencing

(2009) Peter C. Bundock et al.   PLANT BIOTECHNOLOGY JOURNAL

Single nucleotide polymorphism (SNP) discovery in the polyploidBrassica napususing Solexa transcriptome sequencing

(2009) Martin Trick et al.   PLANT BIOTECHNOLOGY JOURNAL

Evaluation of next generation sequencing platforms for population targeted sequencing studies

(2009) Olivier Harismendy et al.   GENOME BIOLOGY

Genetic Diversity in Switchgrass Collections Assessed by EST-SSR Markers

(2008) B. Narasimhamoorthy et al.   BioEnergy Research

SNP discovery in swine by reduced representation and high throughput pyrosequencing

(2008) Ralph T Wiedmann et al.   BMC GENETICS

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

(2008) Curtis P Van Tassell et al.   NATURE METHODS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One

Genetic Structure of Threatened Native Populations and Propagules Used for Restoration in a Clonal Species, American Beachgrass (Ammophila breviligulataFern.)

(2008) Jeremie B. Fant et al.   RESTORATION ECOLOGY

Comparative Genomics in Switchgrass Using 61,585 High-Quality Expressed Sequence Tags

(2008) Christian M. Tobias et al.   Plant Genome