Review
Biochemistry & Molecular Biology
Yi Hong, Mengna Zhang, Rugen Xu
Summary: This review summarizes the achievements in molecular mapping of barley grain size over the past two decades, focusing on the results of QTL linkage analysis and genome-wide association studies. The QTL hotspots and predicted candidate genes are discussed in detail. Furthermore, the reported homologs that determine seed size clustered into several signaling pathways in model plants are also listed, providing a theoretical basis for mining genetic resources and regulatory networks of barley grain size.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2023)
Article
Agronomy
Dong Cao, Dongxia Wang, Shiming Li, Yun Li, Ming Hao, Baolong Liu
Summary: Genetic diversity and loci underlying agronomic traits in triticale were analyzed using genotyping-by-sequencing in a diverse population of 199 accessions. The study identified significant marker-trait associations on multiple chromosomes, providing a basis for understanding the genetic mechanisms of agronomic traits and improving triticale breeding.
THEORETICAL AND APPLIED GENETICS
(2022)
Article
Plant Sciences
Dongyun Lv, Chuanliang Zhang, Rui Yv, Jianxin Yao, Jianhui Wu, Xiaopeng Song, Juntao Jian, Pengbo Song, Zeyuan Zhang, Dejun Han, Daojie Sun
Summary: Plant height is significantly correlated with grain traits, and this study identified multiple QTLs controlling these traits, including stable QTLs in different environments. Two QTL clusters were observed on chromosomes 4B and 4D.
Article
Agronomy
Giovanni Galli, Felipe Sabadin, Germano Martins Ferreira Costa-Neto, Roberto Fritsche-Neto
Summary: This study presents a new way to design and validate high-throughput phenotyping methods through computer simulations, demonstrating that the accuracy of plant height estimation is influenced by factors such as experimental repeatability, treatment variance, and the choice of percentile of points. Through testing of experimental setups, it was shown that the quality of reconstruction in 3D experiments affects inference-making and understanding of high-throughput phenotyping practices.
THEORETICAL AND APPLIED GENETICS
(2021)
Article
Plant Sciences
Hongchun Xiong, Yuting Li, Huijun Guo, Yongdun Xie, Linshu Zhao, Jiayu Gu, Shirong Zhao, Yuping Ding, Luxiang Liu
Summary: This study constructed a high-density genetic linkage map for wheat using the Wheat55K SNP Array and identified QTLs affecting heading date, plant height, thousand grain weight, and spike length in RILs. KASP markers were developed for validation of detected QTLs, and candidate genes affecting PH and TGW were identified, providing new insight into genetic study for wheat traits.
FRONTIERS IN PLANT SCIENCE
(2021)
Article
Biochemistry & Molecular Biology
Jae-Ryoung Park, Dany Resolus, Kyung-Min Kim
Summary: Through QTL mapping, the gene OsBRKq1 related to grain size in rice was identified in the SNDH populations, showing interactions with other genes controlling grain size and potential for increasing yield. Additionally, stable expression levels of OsBRKq1 were confirmed, indicating its potential use for enhancing rice production and addressing food scarcity in the future.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Biochemical Research Methods
Narges Sahranavard, Eisa Jorjani, Hossein Sabouri, Sharifeh Mohahamad Alegh, Mahnaz Katouzi
Summary: The aim of this study was to identify the genomic regions controlling traits related to grains and leaves in wheat. Through genotyping and phenotyping, 10 quantitative trait loci were identified for grain and leaf traits. These findings help to understand the genetic mechanisms of wheat and support marker-assisted breeding programs.
PLANT MOLECULAR BIOLOGY REPORTER
(2023)
Article
Multidisciplinary Sciences
Yunxiao Zheng, Xintong Han, Yongfeng Zhao, Liying Zhu, Yaqun Huang, Xiaoyan Jia, Zhongqin Zhang, Jingtang Chen, Jinjie Guo
Summary: The study identified 20 association loci related to grain yield, plant height, ear height, and general combining ability in maize, providing insight into high-yield breeding and the relationships among these traits.
Article
Agronomy
Guillermo Donaire, Leonardo S. S. Vanzetti, Maria B. Conde, Carlos Bainotti, Leticia Mir, Lucas Borras, Oswaldo Chicaiza, Marcelo Helguera
Summary: In the last century, wheat breeding programs have consistently increased yield but at the expense of grain protein concentrations. This study identified four genomic regions associated with increases in grain protein content and/or grain yield, providing potential tools for wheat breeding programs to break the negative correlation between these traits.
Article
Agronomy
Matheus M. Suela, Camila F. Azevedo, Moyses Nascimento, Ana Carolina C. Nascimento, Marcos Deon de Resende
Summary: Although genome-wide association studies (GWAS) based on single-marker analysis have limitations in terms of high false-positive rates and limited power to detect associations, the use of Bayesian methods and regional heritability mapping (RHM) have shown to be more effective in identifying important gene markers and reducing false-positive rates.
Article
Agronomy
Lingfang Yan, Xiaomeng Yang, Zhenghai Sun, Juan Du, Xiaoying Pu, Jiazhen Yang, Yawen Zeng
Summary: The study successfully identified QTLs of histidine content in barley grains located on chromosomes 2H, 4H, and 7H, providing a reference for further fine mapping, cloning, and transformation of this gene.
GENETIC RESOURCES AND CROP EVOLUTION
(2021)
Article
Plant Sciences
Chunyun Zhou, Hongchun Xiong, Meiyu Fu, Huijun Guo, Linshu Zhao, Yongdun Xie, Jiayu Gu, Shirong Zhao, Yuping Ding, Yuting Li, Xuejun Li, Luxiang Liu
Summary: In this study, a high-density genetic linkage map was constructed using a recombinant inbred line (RIL) population derived from a mutant Rht8-2 and a local wheat variety. Seven stable QTLs for plant height and spike compactness were identified, and Rht8-B1 was confirmed as the causal gene for qPH2B.1. Furthermore, it was found that Rht8-B1 had a lower impact on plant height compared to Rht8-D1. These findings provide important information for marker-assisted selection in wheat breeding.
Article
Plant Sciences
Asis Shrestha, Francesco Cosenza, Delphine van Inghelandt, Po-Ya Wu, Jinquan Li, Federico A. Casale, Marius Weisweiler, Benjamin Stich
Summary: The genetic architecture of grain size and weight in barley was studied using a multi-parent population. Significant genotypic variation was observed for seed size characteristics, with multiple potential regulators identified. Additionally, sink capacity was found to be the primary determinant of grain weight in barley.
JOURNAL OF EXPERIMENTAL BOTANY
(2022)
Article
Agronomy
Mohammed A. Sayed, Mohamed B. Ali, Bakry A. Bakry, Ashraf N. El-Sadek, Jens Leon
Summary: By evaluating a mapping population of 298 doubled haploid lines in multienvironmental trials, our study identified 35 QTLs related to heading date and grain yield traits, with four of them being pleiotropic loci. The results demonstrated that several key QTLs and genes play crucial roles in barley yield and adaptation.
Article
Multidisciplinary Sciences
Hafiz Ghulam Muhu-Din Ahmed, Yawen Zeng, Muhammad Iqbal, Muhammad Abdul Rehman Rashid, Humayun Raza, Aziz Ullah, Muhammad Ali, Muhammad Majid Yar, Adnan Noor Shah
Summary: In this study, a genome-wide association study (GWAS) was conducted to identify significant SNPs associated with drought tolerance and yield in wheat. The results validated previous findings and revealed novel associations under drought-stressed conditions. Furthermore, 171 candidate genes were identified, providing potential targets for further functional characterization.
Article
Plant Sciences
G. Tapia, J. Mendez, L. Inostroza
Article
Agriculture, Multidisciplinary
Luis Inostroza, Hernan Acuna, Gerardo Tapia
CHILEAN JOURNAL OF AGRICULTURAL RESEARCH
(2015)
Article
Agronomy
Luis Inostroza, Hernan Acuna, Patricio Munoz, Catalina Vasquez, Joel Ibanez, Gerardo Tapia, Maria Teresa Pino, Hernan Aguilera
Article
Agriculture, Multidisciplinary
Luis Inostroza, Iris Lobos, Hernan Acuna, Catalina Vasquez, Gerardo Tapia, Gerson Monzon
CHILEAN JOURNAL OF AGRICULTURAL RESEARCH
(2017)
Article
Agronomy
Lin Xing, Josh J. Pittman, Luis Inostroza, Twain J. Butler, Patricio Munoz
Article
Agronomy
Catalina Vasquez, Luis Inostroza, Hernan Acuna
Article
Agronomy
H. Acuna, L. Inostroza
GRASS AND FORAGE SCIENCE
(2013)
Article
Agriculture, Multidisciplinary
George A. Cedeno-Garcia, Macarena Gerding, Gary Moraga, Luis Inostroza, Susana Fischer, Maurine Sepulveda-Caamano, Pia Oyarzua
CHILEAN JOURNAL OF AGRICULTURAL RESEARCH
(2018)
Article
Agronomy
Luis Inostroza, Hernan Acuna, Jose Mendez, Mehul Bhakta, Salvador A. Gezan
Article
Agronomy
Alan W. Humphries, Carlos Ovalle, Steve Hughes, Alejandro del Pozo, Luis Inostroza, Viviana Barahona, Linqing Yu, Sakysh Yerzhanova, Trevor Rowe, Jeff Hill, Galiolla Meiirman, Serik Abayev, E. Charles Brummer, David M. Peck, Saltanat Toktarbekova, Bauyrzhan Kalibayev, Soledad Espinoza, Jorge Ivelic-Saez, Edwin Bingham, Ernest Small, Benjamin Kilian
Summary: The study focused on describing and evaluating the phenotypic diversity of wild relatives of alfalfa to find germplasm with drought tolerance and improved forage yield traits. New hybrids were created to introduce genetic diversity for breeding programs in warm and cool dry temperate environments. Accessions and pre-breeding lines were donated for conservation and distribution in the Australian Pastures Genebank.
Article
Agronomy
Luis Inostroza, Fernando Ortega-Klose, Catalina Vasquez, Rosemarie Wilckens
Article
Plant Sciences
Luis Inostroza, Soledad Espinoza, Viviana Barahona, Macarena Gerding, Alan Humphries, Alejandro del Pozo, Carlos Ovalle
Summary: The study evaluated the phenotypic diversity and productivity of a diverse panel of alfalfa cultivars, landraces, and wild relatives with putative drought tolerance in two Mediterranean environments. The research revealed significant phenotypic variation among and within subspecies for traits such as forage yield, indicating potential for breeding high-yielding varieties. Principal component analysis highlighted the relationship between fall dormancy, taxa, and breeding status with the agronomic performance of alfalfa accessions.
Article
Plant Sciences
Gerardo Tapia, Jose Mendez, Luis Inostroza, Camila Lozano
Summary: The drought tolerance of nine ancient Chilean landraces of common bean was analyzed, and it was found that landraces with lower leaf expansion rate showed lower yield loss under drought conditions.
Article
Agriculture, Multidisciplinary
Luis Inostroza, Hernan Acuna, Jose Mendez
CROP & PASTURE SCIENCE
(2015)
Article
Plant Sciences
Luis Inostroza, Mehul Bhakta, Hernan Acuna, Catalina Vasquez, Joel Ibanez, Gerardo Tapia, Wenbin Mei, Matias Kirst, Marcio Resende, Patricio Munoz