Differential simulated annealing: a robust and efficient global optimization algorithm for parameter estimation of biological networks

Systematic parameter estimation in data-rich environments for cell signalling dynamics

(2013) Tri Hieu Nim et al.   BIOINFORMATICS

An Improved Swarm Optimization for Parameter Estimation and Biological Model Selection

(2013) Afnizanfaizal Abdullah et al.   PLoS One

Incremental parameter estimation of kinetic metabolic network models

(2012) Gengjie Jia et al.   BMC Systems Biology

A Whole-Cell Computational Model Predicts Phenotype from Genotype

(2012) Jonathan R. Karr et al.   CELL

Parameter estimation of kinetic models from metabolic profiles: two-phase dynamic decoupling method

(2011) Gengjie Jia et al.   BIOINFORMATICS

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

(2010) Chen Li et al.   BMC Systems Biology

Why are Nonlinear Fits to Data so Challenging?

(2010) Mark K. Transtrum et al.   PHYSICAL REVIEW LETTERS

Recent developments in parameter estimation and structure identification of biochemical and genomic systems

(2009) I-Chun Chou et al.   MATHEMATICAL BIOSCIENCES

Hybrid optimization method with general switching strategy for parameter estimation

(2008) Eva Balsa-Canto et al.   BMC Systems Biology