Gene silencing and large-scale domain structure of the E. coli genome

NuST: analysis of the interplay between nucleoid organization and gene expression

(2012) V. F. Scolari et al.   BIOINFORMATICS

Gene location and DNA density determine transcription factor distributions in Escherichia coli

(2012) Thomas E Kuhlman et al.   Molecular Systems Biology

The nucleoid-associated proteins H-NS and FIS modulate the DNA supercoiling response of the pel genes, the major virulence factors in the plant pathogen bacterium Dickeya dadantii

(2012) Zghidi-Abouzid Ouafa et al.   NUCLEIC ACIDS RESEARCH

Membrane protein expression triggers chromosomal locus repositioning in bacteria

(2012) E. A. Libby et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Physical descriptions of the bacterial nucleoid at large scales, and their biological implications

(2012) Vincenzo G Benza et al.   REPORTS ON PROGRESS IN PHYSICS

Long-Range Chromosome Organization in E. coli: A Site-Specific System Isolates the Ter Macrodomain

(2012) Axel Thiel et al.   PLoS Genetics

DnaA and the timing of chromosome replication in Es-cherichia coli as a function of growth rate

(2011) Matthew AA Grant et al.   BMC Systems Biology

Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle

(2011) P. Sobetzko et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chromosome Organization by a Nucleoid-Associated Protein in Live Bacteria

(2011) W. Wang et al.   SCIENCE

Chromosomal Macrodomains and Associated Proteins: Implications for DNA Organization and Replication in Gram Negative Bacteria

(2011) Remus T. Dame et al.   PLoS Genetics

Effects of nucleoid-associated proteins on bacterial chromosome structure and gene expression

(2010) Douglas F Browning et al.   CURRENT OPINION IN MICROBIOLOGY

Gene clusters reflecting macrodomain structure respond to nucleoid perturbations

(2010) Vittore F. Scolari et al.   Molecular BioSystems

Chromosomal periodicity and positional networks of genes in Escherichia coli

(2010) Anthony Mathelier et al.   Molecular Systems Biology

Spatial organization of the flow of genetic information in bacteria

(2010) Paula Montero Llopis et al.   NATURE

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

(2010) Shane C. Dillon et al.   NATURE REVIEWS MICROBIOLOGY

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

(2010) Christina Kahramanoglou et al.   NUCLEIC ACIDS RESEARCH

Constitutive heterochromatin: a surprising variety of expressed sequences

(2009) Patrizio Dimitri et al.   CHROMOSOMA

Protein Occupancy Landscape of a Bacterial Genome

(2009) Tiffany Vora et al.   MOLECULAR CELL

Differential Regulation of Horizontally Acquired and Core Genome Genes by the Bacterial Modulator H-NS

(2009) Rosa C. Baños et al.   PLoS Genetics

Dissecting the logical types of network control in gene expression profiles

(2008) Carsten Marr et al.   BMC Systems Biology

The MatP/matS Site-Specific System Organizes the Terminus Region of the E. coli Chromosome into a Macrodomain

(2008) Romain Mercier et al.   CELL

Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years

(2007) M. J. Lercher et al.   MOLECULAR BIOLOGY AND EVOLUTION