Extracting meaning from biological imaging data

Visualization and correction of automated segmentation, tracking and lineaging from 5-D stem cell image sequences

(2014) Eric Wait et al.   BMC BIOINFORMATICS

Objective comparison of particle tracking methods

(2014) Nicolas Chenouard et al.   NATURE METHODS

Extensible visualization and analysis for multidimensional images using Vaa3D

(2014) Hanchuan Peng et al.   Nature Protocols

Biological imaging software tools

(2012) Kevin W Eliceiri et al.   NATURE METHODS

Image-derived, three-dimensional generative models of cellular organization

(2011) Tao Peng et al.   CYTOMETRY PART A

Generation of Rab-based transgenic lines for in vivo studies of endosome biology in zebrafish

(2011) Brian S. Clark et al.   DEVELOPMENTAL DYNAMICS

A Semi-Markov Model for Mitosis Segmentation in Time-Lapse Phase Contrast Microscopy Image Sequences of Stem Cell Populations

(2011) An-An Liu et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing

(2011) Mark Winter et al.   Nature Protocols

Computational prediction of neural progenitor cell fates

(2010) Andrew R Cohen et al.   NATURE METHODS

Automatic Summarization of Changes in Biological Image Sequences Using Algorithmic Information Theory

(2009) A.R. Cohen et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE