Killer Whale Nuclear Genome and mtDNA Reveal Widespread Population Bottleneck during the Last Glacial Maximum

Great ape genetic diversity and population history

(2013) Javier Prado-Martinez et al.   NATURE

Ancient DNA reveals that bowhead whale lineages survived Late Pleistocene climate change and habitat shifts

(2013) Andrew D. Foote et al.   Nature Communications

The tiger genome and comparative analysis with lion and snow leopard genomes

(2013) Yun Sung Cho et al.   Nature Communications

The rhesus macaque is three times as diverse but more closely equivalent in damaging coding variation as compared to the human

(2012) Qiaoping Yuan et al.   BMC GENETICS

Influences of past climatic changes on historical population structure and demography of a cosmopolitan marine predator, the common dolphin (genusDelphinus)

(2012) Ana R. Amaral et al.   MOLECULAR ECOLOGY

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Dolphin genome provides evidence for adaptive evolution of nervous system genes and a molecular rate slowdown

(2012) M. R. McGowen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Poleward bound: biological impacts of Southern Hemisphere glaciation

(2012) Ceridwen I. Fraser et al.   TRENDS IN ECOLOGY & EVOLUTION

Southern Ocean diversity: new paradigms from molecular ecology

(2012) A. Louise Allcock et al.   TRENDS IN ECOLOGY & EVOLUTION

Predicted habitat shifts of Pacific top predators in a changing climate

(2012) Elliott L. Hazen et al.   Nature Climate Change

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Relaxed Clocks and Inferences of Heterogeneous Patterns of Nucleotide Substitution and Divergence Time Estimates across Whales and Dolphins (Mammalia: Cetacea)

(2011) A. Dornburg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Inference of human population history from individual whole-genome sequences

(2011) Heng Li et al.   NATURE

The Benguela upwelling related to the Miocene cooling events and the development of the Antarctic Circumpolar Current: Evidence from calcareous dinoflagellate cysts

(2011) Sonja Heinrich et al.   PALEOCEANOGRAPHY

Biomarker records of phytoplankton productivity and community structure changes in the Japan Sea over the last 166 kyr

(2011) Lei Xing et al.   QUATERNARY SCIENCE REVIEWS

Faunal histories from Holocene ancient DNA

(2011) Mark de Bruyn et al.   TRENDS IN ECOLOGY & EVOLUTION

Genome sequence and global sequence variation map with 5.5 million SNPs in Chinese rhesus macaque

(2011) Xiaodong Fang et al.   GENOME BIOLOGY

A review and tests of hypotheses about causes of the KwaZulu-Natal sardine run

(2010) P Fréon et al.   AFRICAN JOURNAL OF MARINE SCIENCE

Killer whales in South African waters—a review of their biology

(2010) P B Best et al.   AFRICAN JOURNAL OF MARINE SCIENCE

Savant: genome browser for high-throughput sequencing data

(2010) M. Fiume et al.   BIOINFORMATICS

The influence of glacial epochs and habitat dependence on the diversity and phylogeography of a coastal dolphin species: Lagenorhynchus albirostris

(2010) E. Banguera-Hinestroza et al.   CONSERVATION GENETICS

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

(2010) P. A. Morin et al.   GENOME RESEARCH

Estimated field metabolic rates and prey requirements of resident killer whales

(2010) Dawn P. Noren   MARINE MAMMAL SCIENCE

Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks

(2010) Simon Y. W. Ho et al.   Mitochondrial DNA

Genetic differentiation among North Atlantic killer whale populations

(2010) ANDREW D. FOOTE et al.   MOLECULAR ECOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Ecological Change, Range Fluctuations and Population Dynamics during the Pleistocene

(2009) Michael Hofreiter et al.   CURRENT BIOLOGY

Pliocene–Pleistocene variability of upwelling activity, productivity, and nutrient cycling in the Benguela region

(2009) Johan Etourneau et al.   GEOLOGY

Social cohesion among kin, gene flow without dispersal and the evolution of population genetic structure in the killer whale (Orcinus orca)

(2009) M. PILOT et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Thriving and declining: climate variability shaping life-history and population persistence of Mesodesma donacium in the Humboldt Upwelling System

(2009) JM Riascos et al.   MARINE ECOLOGY PROGRESS SERIES

Big and Slow: Phylogenetic Estimates of Molecular Evolution in Baleen Whales (Suborder Mysticeti)

(2009) J. A. Jackson et al.   MOLECULAR BIOLOGY AND EVOLUTION

Kelp genes reveal effects of subantarctic sea ice during the Last Glacial Maximum

(2009) C. I. Fraser et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Humboldt Current System: Ecosystem components and processes, fisheries, and sediment studies

(2009) Vivian Montecino et al.   PROGRESS IN OCEANOGRAPHY

Radiation of Extant Cetaceans Driven by Restructuring of the Oceans

(2009) Mette E. Steeman et al.   SYSTEMATIC BIOLOGY

Rapid Response of a Marine Mammal Species to Holocene Climate and Habitat Change

(2009) Mark de Bruyn et al.   PLoS Genetics

Climate change and a poleward shift in the distribution of the Pacific white-sided dolphin in the northeastern Pacific

(2009) CJ Salvadeo et al.   Endangered Species Research

Mitochondrial sequence divergence among Antarctic killer whale ecotypes is consistent with multiple species

(2008) R. G LeDuc et al.   Biology Letters

Sea level in the late Quaternary: patterns of variation and implications

(2008) W. H. Berger   INTERNATIONAL JOURNAL OF EARTH SCIENCES

Radiolarian and sedimentologic paleoproductivity proxies in late Pleistocene sediments of the Benguela Upwelling System, ODP Site 1084

(2008) D. Lazarus et al.   MARINE MICROPALEONTOLOGY

Foraminiferal Isotope Evidence of Reduced Nitrogen Fixation in the Ice Age Atlantic Ocean

(2008) H. Ren et al.   SCIENCE