Prevalence of Multinucleotide Replacements in Evolution of Primates and Drosophila

Genome-wide Single-Cell Analysis of Recombination Activity and De Novo Mutation Rates in Human Sperm

(2012) Jianbin Wang et al.   CELL

Estimating the Rate of Adaptive Molecular Evolution When the Evolutionary Divergence Between Species is Small

(2012) Peter D. Keightley et al.   JOURNAL OF MOLECULAR EVOLUTION

Heterogeneity of the Transition/Transversion Ratio in Drosophila and Hominidae Genomes

(2012) V. B. Seplyarskiy et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Major role of positive selection in the evolution of conservative segments of Drosophila proteins

(2012) G. A. Bazykin et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evidence of Abundant Purifying Selection in Humans for Recently Acquired Regulatory Functions

(2012) L. D. Ward et al.   SCIENCE

Pervasive Multinucleotide Mutational Events in Eukaryotes

(2011) Daniel R. Schrider et al.   CURRENT BIOLOGY

Mutation Rate Distribution Inferred from Coincident SNPs and Coincident Substitutions

(2011) Philip L. F. Johnson et al.   Genome Biology and Evolution

Positive and Negative Selection in Murine Ultraconserved Noncoding Elements

(2011) Daniel L. Halligan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Late-Replicating Domains Have Higher Divergence and Diversity in Drosophila melanogaster

(2011) Claudia C. Weber et al.   MOLECULAR BIOLOGY AND EVOLUTION

Variation in the mutation rate across mammalian genomes

(2011) Alan Hodgkinson et al.   NATURE REVIEWS GENETICS

Selective Constraints on Amino Acids Estimated by a Mechanistic Codon Substitution Model with Multiple Nucleotide Changes

(2011) Sanzo Miyazawa   PLoS One

Correlated Evolution of Nearby Residues in Drosophilid Proteins

(2011) Benjamin Callahan et al.   PLoS Genetics

A Human Genome Structural Variation Sequencing Resource Reveals Insights into Mutational Mechanisms

(2010) Jeffrey M. Kidd et al.   CELL

The Positive Correlation between dN/dS and dS in Mammals Is Due to Runs of Adjacent Substitutions

(2010) Nina Stoletzki et al.   MOLECULAR BIOLOGY AND EVOLUTION

On the Utility of Short Intron Sequences as a Reference for the Detection of Positive and Negative Selection in Drosophila

(2010) J. Parsch et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Rate of Establishment of Complex Adaptations

(2010) M. Lynch et al.   MOLECULAR BIOLOGY AND EVOLUTION

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

Mammalian recombination hot spots: properties, control and evolution

(2010) Kenneth Paigen et al.   NATURE REVIEWS GENETICS

The UCSC Genome Browser database: update 2011

(2010) P. A. Fujita et al.   NUCLEIC ACIDS RESEARCH

Human Triallelic Sites: Evidence for a New Mutational Mechanism?

(2009) A. Hodgkinson et al.   GENETICS

Estimates of Positive Darwinian Selection Are Inflated by Errors in Sequencing, Annotation, and Alignment

(2009) Adrian Schneider et al.   Genome Biology and Evolution

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

(2009) P. D. Keightley et al.   GENOME RESEARCH

The difficulty of avoiding false positives in genome scans for natural selection

(2009) S. Mallick et al.   GENOME RESEARCH

Detection of nonneutral substitution rates on mammalian phylogenies

(2009) K. S. Pollard et al.   GENOME RESEARCH

Closely spaced multiple mutations as potential signatures of transient hypermutability in human genes

(2009) Jian-Min Chen et al.   HUMAN MUTATION

Human mutation rate associated with DNA replication timing

(2009) John A Stamatoyannopoulos et al.   NATURE GENETICS

Cryptic Variation in the Human Mutation Rate

(2009) Alan Hodgkinson et al.   PLOS BIOLOGY

Pervasive Hitchhiking at Coding and Regulatory Sites in Humans

(2009) James J. Cai et al.   PLoS Genetics

Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models

(2008) A. F. Y. Poon et al.   BIOINFORMATICS

Polymorphism Due to Multiple Amino Acid Substitutions at a Codon Site Within Ciona savignyi

(2008) N. Donmez et al.   GENETICS

High-resolution mapping of meiotic crossovers and non-crossovers in yeast

(2008) Eugenio Mancera et al.   NATURE

FlyBase: enhancing Drosophila Gene Ontology annotations

(2008) S. Tweedie et al.   NUCLEIC ACIDS RESEARCH

Another step toward quantifying spontaneous mutation

(2008) A. S. Kondrashov   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alignment Uncertainty and Genomic Analysis

(2008) K. M. Wong et al.   SCIENCE

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE