Streptophyte Algae and the Origin of Land Plants Revisited Using Heterogeneous Models with Three New Algal Chloroplast Genomes

Cnidarian phylogenetic relationships as revealed by mitogenomics

(2013) Ehsan Kayal et al.   BMC EVOLUTIONARY BIOLOGY

Chloroplast Phylogenomics Indicates that Ginkgo biloba Is Sister to Cycads

(2013) Chung-Shien Wu et al.   Genome Biology and Evolution

Origin of land plants using the multispecies coalescent model

(2013) Bojian Zhong et al.   TRENDS IN PLANT SCIENCE

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)

(2012) Matthew Parks et al.   BMC EVOLUTIONARY BIOLOGY

Multigene Phylogeny of the Green Lineage Reveals the Origin and Diversification of Land Plants

(2012) Cédric Finet et al.   CURRENT BIOLOGY

Origin of land plants revisited in the light of sequence contamination and missing data

(2012) Simon Laurin-Lemay et al.   CURRENT BIOLOGY

Broad Phylogenomic Sampling and the Sister Lineage of Land Plants

(2012) Ruth E. Timme et al.   PLoS One

Phylogenomics and a posteriori data partitioning resolve the Cretaceous angiosperm radiation Malpighiales

(2012) Z. Xi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Evolutionary Root of Flowering Plants

(2012) Vadim V. Goremykin et al.   SYSTEMATIC BIOLOGY

Inferring the higher-order phylogeny of mosses (Bryophyta) and relatives using a large, multigene plastid data set

(2011) Y. Chang et al.   AMERICAN JOURNAL OF BOTANY

Origin of land plants: Do conjugating green algae hold the key?

(2011) Sabina Wodniok et al.   BMC EVOLUTIONARY BIOLOGY

Systematic Error in Seed Plant Phylogenomics

(2011) Bojian Zhong et al.   Genome Biology and Evolution

Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough

(2011) Hervé Philippe et al.   PLOS BIOLOGY

Amino Acid Compositional Shifts During Streptophyte Transitions to Terrestrial Habitats

(2010) Richard W. Jobson et al.   JOURNAL OF MOLECULAR EVOLUTION

Automated Removal of Noisy Data in Phylogenomic Analyses

(2010) Vadim V. Goremykin et al.   JOURNAL OF MOLECULAR EVOLUTION

The Position of Gnetales among Seed Plants: Overcoming Pitfalls of Chloroplast Phylogenomics

(2010) B. Zhong et al.   MOLECULAR BIOLOGY AND EVOLUTION

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

(2009) Nicolas Lartillot et al.   BIOINFORMATICS

The Chloroplast Genomes of the Green Algae Pedinomonas minor, Parachlorella kessleri, and Oocystis solitaria Reveal a Shared Ancestry between the Pedinomonadales and Chlorellales

(2009) M. Turmel et al.   MOLECULAR BIOLOGY AND EVOLUTION

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

The Chloroplast Genomes of the Green Algae Pyramimonas, Monomastix, and Pycnococcus Shed New light on the Evolutionary History of Prasinophytes and the Origin of the Secondary Chloroplasts of Euglenids

(2008) Monique Turmel et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Site- and Time-Heterogeneous Model of Amino Acid Replacement

(2008) Samuel Blanquart et al.   MOLECULAR BIOLOGY AND EVOLUTION

Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo

(2008) M. Pagel et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

(2008) N. Lartillot et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Testing regions with nonsmooth boundaries via multiscale bootstrap

(2007) Hidetoshi Shimodaira   JOURNAL OF STATISTICAL PLANNING AND INFERENCE