An Update of DIVERGE Software for Functional Divergence Analysis of Protein Family

Histone modification pattern evolution after yeast gene duplication

(2012) Yangyun Zou et al.   BMC EVOLUTIONARY BIOLOGY

Revisit on the evolutionary relationship between alternative splicing and gene duplication

(2012) Zhixi Su et al.   GENE

Inferring sequence regions under functional divergence in duplicate genes

(2011) Yi-Fei Huang et al.   BIOINFORMATICS

A practical guide for the computational selection of residues to be experimentally characterized in protein families

(2011) A. Benitez-Paez et al.   BRIEFINGS IN BIOINFORMATICS

Predominant Gain of Promoter TATA Box after Gene Duplication Associated with Stress Responses

(2011) Yangyun Zou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Determinants, Discriminants, Conserved Residues - A Heuristic Approach to Detection of Functional Divergence in Protein Families

(2011) Kavitha Bharatham et al.   PLoS One

Comment on "Positive Selection of Tyrosine Loss in Metazoan Evolution"

(2011) Z. Su et al.   SCIENCE

Multi-Harmony: detecting functional specificity from sequence alignment

(2010) B. W. Brandt et al.   NUCLEIC ACIDS RESEARCH

Protein interactions and ligand binding: From protein subfamilies to functional specificity

(2010) A. Rausell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Analysis of functional divergence within two structurally related glycoside hydrolase families

(2009) Blake Mertz et al.   BIOPOLYMERS

Ensemble approach to predict specificity determinants: benchmarking and validation

(2009) Saikat Chakrabarti et al.   BMC BIOINFORMATICS

Comparative study of human mitochondrial proteome reveals extensive protein subcellular relocalization after gene duplications

(2009) Xiujuan Wang et al.   BMC EVOLUTIONARY BIOLOGY

Differences in duplication age distributions between human GPCRs and their downstream genes from a network prospective

(2009) Yong Huang et al.   BMC GENOMICS

Characterization and prediction of residues determining protein functional specificity

(2008) John A. Capra et al.   BIOINFORMATICS

SDR: a database of predicted specificity-determining residues in proteins

(2008) J. E. Donald et al.   NUCLEIC ACIDS RESEARCH