Protein Conformational Diversity Modulates Sequence Divergence

Relative Contributions of Intrinsic Structural–Functional Constraints and Translation Rate to the Evolution of Protein-Coding Genes

(2010) Yuri I. Wolf et al.   Genome Biology and Evolution

Statistical Potentials for Improved Structurally Constrained Evolutionary Models

(2010) Claudia L. Kleinman et al.   MOLECULAR BIOLOGY AND EVOLUTION

PCDB: a database of protein conformational diversity

(2010) Ezequiel I. Juritz et al.   NUCLEIC ACIDS RESEARCH

Folding and binding cascades: Dynamic landscapes and population shifts

(2010) Sandeep Kumar et al.   PROTEIN SCIENCE

Protein functional landscapes, dynamics, allostery: a tortuous path towards a universal theoretical framework

(2010) Pavel I. Zhuravlev et al.   QUARTERLY REVIEWS OF BIOPHYSICS

An Ensemble View of Allostery

(2010) V. J. Hilser   SCIENCE

Global distribution of conformational states derived from redundant models in the PDB points to non-uniqueness of the protein structure

(2009) P. V. Burra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Effective knowledge-based potentials

(2009) Evandro Ferrada et al.   PROTEIN SCIENCE

Protein Dynamism and Evolvability

(2009) N. Tokuriki et al.   SCIENCE

A Correspondence Between Solution-State Dynamics of an Individual Protein and the Sequence and Conformational Diversity of its Family

(2009) Gregory D. Friedland et al.   PLoS Computational Biology

Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution

(2008) D. Allan Drummond et al.   CELL

Evolutionary conservation of protein vibrational dynamics

(2008) Sandra Maguid et al.   GENE

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution

(2008) O. F. Lange et al.   SCIENCE

MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison

(2002) Angel R. Ortiz et al.   PROTEIN SCIENCE

Multiple diverse ligands binding at a single protein site: A matter of pre-existing populations

(2002) Buyong Ma et al.   PROTEIN SCIENCE