Efficient Selection of Branch-Specific Models of Sequence Evolution

Comparison of methods for calculating conditional expectations of sufficient statistics for continuous time Markov chains

(2011) Paula Tataru et al.   BMC BIOINFORMATICS

NONADAPTIVE EVOLUTION OF MITOCHONDRIAL GENOME SIZE

(2011) Bastien Boussau et al.   EVOLUTION

Reducing Model Complexity of the General Markov Model of Evolution

(2011) V. Jayaswal et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adaptation to Environmental Temperature Is a Major Determinant of Molecular Evolutionary Rates in Archaea

(2011) M. Groussin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method

(2011) C. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bayesian random local clocks, or one rate to rule them all

(2010) Alexei J Drummond et al.   BMC BIOLOGY

A Phylogenetic Model for Investigating Correlated Evolution of Substitution Rates and Continuous Phenotypic Characters

(2010) N. Lartillot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Simulation from endpoint-conditioned, continuous-time Markov chains on a finite state space, with applications to molecular evolution

(2009) Asger Hobolth et al.   Annals of Applied Statistics

Why do species vary in their rate of molecular evolution?

(2009) L. Bromham   Biology Letters

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genomes as documents of evolutionary history

(2009) Bastien Boussau et al.   TRENDS IN ECOLOGY & EVOLUTION

Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs

(2008) Julien Dutheil et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeny, Recombination, and Mechanisms of Stepwise Mitochondrial Genome Reorganization in Mantellid Frogs from Madagascar

(2008) A. Kurabayashi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Parallel adaptations to high temperatures in the Archaean eon

(2008) Bastien Boussau et al.   NATURE

Palaeotemperature trend for Precambrian life inferred from resurrected proteins

(2008) Eric A. Gaucher et al.   NATURE

Fast, accurate and simulation-free stochastic mapping

(2008) V. N Minin et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES