Large-Scale Analysis of Plasmid Relationships through Gene-Sharing Networks

The mosaicism of plasmids revealed by atypical genes detection and analysis

(2011) Emanuele Bosi et al.   BMC GENOMICS

Let Them Fall Where They May: Congruence Analysis in Massive Phylogenetically Messy Data Sets

(2011) J. W. Leigh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Actinobacteria: the good, the bad, and the ugly

(2010) Vivian Miao et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Exploring the evolutionary dynamics of plasmids: the Acinetobacter pan-plasmidome

(2010) Marco Fondi et al.   BMC EVOLUTIONARY BIOLOGY

Virulence of an emerging pathogenic lineage of Vibrio nigripulchritudo is dependent on two plasmids

(2010) Frédérique Le Roux et al.   ENVIRONMENTAL MICROBIOLOGY

The horizontal flow of the plasmid resistome: clues from inter-generic similarity networks

(2010) Marco Fondi et al.   ENVIRONMENTAL MICROBIOLOGY

Genome Networks Root the Tree of Life between Prokaryotic Domains

(2010) Tal Dagan et al.   Genome Biology and Evolution

Mobility of Plasmids

(2010) C. Smillie et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Sequence Analysis of pKF3-70 in Klebsiella pneumoniae: Probable Origin from R100-Like Plasmid of Escherichia coli

(2010) Huiguang Yi et al.   PLoS One

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

Conjugative plasmids: vessels of the communal gene pool

(2009) A. Norman et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Getting a better picture of microbial evolution en route to a network of genomes

(2009) T. Dagan et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Complete nucleotide sequence of pGO1, the prototype conjugative plasmid from the staphylococci

(2009) J.A. Caryl et al.   PLASMID

Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

(2009) Sébastien Rodrigue et al.   PLoS One

Network analyses structure genetic diversity in independent genetic worlds

(2009) S. Halary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Correlation between Detection of a Plasmid and High-Level Virulence of Vibrio nigripulchritudo, a Pathogen of the Shrimp Litopenaeus stylirostris

(2008) Y. Reynaud et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network

(2008) Matteo Brilli et al.   BMC BIOINFORMATICS

Antibiotics and antibiotic resistance in water environments

(2008) Fernando Baquero et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant

(2008) Andreas Schlüter et al.   JOURNAL OF BIOTECHNOLOGY

Reticulate Representation of Evolutionary and Functional Relationships between Phage Genomes

(2008) G. Lima-Mendez et al.   MOLECULAR BIOLOGY AND EVOLUTION

Network Analysis Tools: from biological networks to clusters and pathways

(2008) Sylvain Brohée et al.   Nature Protocols

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

ARDB--Antibiotic Resistance Genes Database

(2008) B. Liu et al.   NUCLEIC ACIDS RESEARCH

Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution

(2008) T. Dagan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

CB2cannabinoid receptor agonists attenuate TNF-α-induced human vascular smooth muscle cell proliferation and migration

(2007) M Rajesh et al.   BRITISH JOURNAL OF PHARMACOLOGY