Evolution at the Subgene Level: Domain Rearrangements in the Drosophila Phylogeny

The Plexus Model for the Inference of Ancestral Multidomain Proteins

(2011) John Wiedenhoeft et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Bayesian Approach for Fast and Accurate Gene Tree Reconstruction

(2010) M. D. Rasmussen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rapid evolutionary innovation during an Archaean genetic expansion

(2010) Lawrence A. David et al.   NATURE

Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster

(2010) R. L. Rogers et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid Diversification of Cell Signaling Phenotypes by Modular Domain Recombination

(2010) S. G. Peisajovich et al.   SCIENCE

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

(2009) Geraldine Butler et al.   NATURE

Patterns of Amino Acid Evolution in the Drosophila ananassae Chimeric Gene, siren, Parallel Those of Other Adh-Derived Chimeras

(2008) H.-J. Shih et al.   GENETICS

On the origin of new genes in Drosophila

(2008) Q. Zhou et al.   GENOME RESEARCH

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

(2008) A. J. Vilella et al.   GENOME RESEARCH

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Arrangements in the modular evolution of proteins

(2008) Andrew D. Moore et al.   TRENDS IN BIOCHEMICAL SCIENCES

Domain Tree-Based Analysis of Protein Architecture Evolution

(2007) K. Forslund et al.   MOLECULAR BIOLOGY AND EVOLUTION