qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments

Data processing methods and quality control strategies for label-free LC–MS protein quantification

(2013) Marianne Sandin et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Metriculator: quality assessment for mass spectrometry-based proteomics

(2013) R. M. Taylor et al.   BIOINFORMATICS

Automated quality control system for LC-SRM setups

(2013) Johan Teleman et al.   Journal of Proteomics

Interlaboratory studies and initiatives developing standards for proteomics

(2013) Alexander R. Ivanov et al.   PROTEOMICS

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary

(2013) G. Mayer et al.   Database-The Journal of Biological Databases and Curation

QuaMeter: Multivendor Performance Metrics for LC–MS/MS Proteomics Instrumentation

(2012) Ze-Qiang Ma et al.   ANALYTICAL CHEMISTRY

Quality assessment for clinical proteomics

(2012) David L. Tabb   CLINICAL BIOCHEMISTRY

SIMPATIQCO: A Server-Based Software Suite Which Facilitates Monitoring the Time Course of LC–MS Performance Metrics on Orbitrap Instruments

(2012) Peter Pichler et al.   JOURNAL OF PROTEOME RESEARCH

The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results

(2012) Andrew R. Jones et al.   MOLECULAR & CELLULAR PROTEOMICS

Ten Years of Standardizing Proteomic Data: A Report on the HUPO-PSI Spring Workshop

(2012) Sandra Orchard et al.   PROTEOMICS

The Units Ontology: a tool for integrating units of measurement in science

(2012) G. V. Gkoutos et al.   Database-The Journal of Biological Databases and Curation

TraML—A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists

(2011) Eric W. Deutsch et al.   MOLECULAR & CELLULAR PROTEOMICS

A posteriori quality control for the curation and reuse of public proteomics data

(2011) Joseph M. Foster et al.   PROTEOMICS

Quality Control in Proteomics

(2011)   PROTEOMICS

mzML—a Community Standard for Mass Spectrometry Data

(2010) Lennart Martens et al.   MOLECULAR & CELLULAR PROTEOMICS

The Ontology Lookup Service: bigger and better

(2010) R. Cote et al.   NUCLEIC ACIDS RESEARCH

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics

(2010) Kenny Helsens et al.   PROTEOMICS

Using Laboratory Information Management Systems as central part of a proteomics data workflow

(2010) Christian Stephan et al.   PROTEOMICS

Performance Metrics for Liquid Chromatography-Tandem Mass Spectrometry Systems in Proteomics Analyses

(2009) Paul A. Rudnick et al.   MOLECULAR & CELLULAR PROTEOMICS

A HUPO test sample study reveals common problems in mass spectrometry–based proteomics

(2009) Alexander W Bell et al.   NATURE METHODS

The PSI semantic validator: A framework to check MIAPE compliance of proteomics data

(2009) Luisa Montecchi-Palazzi et al.   PROTEOMICS

OpenMS – An open-source software framework for mass spectrometry

(2008) Marc Sturm et al.   BMC BIOINFORMATICS

Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC)

(2008) An Staes et al.   PROTEOMICS

Performance characteristics of an FT MS-based workflow for label-free differential MS analysis of human plasma: standards, reproducibility, targeted feature investigation, and application to a model of controlled myocardial infarction

(2008) Jennifer Sutton et al.   Proteomics Clinical Applications