High Resolution Quantitative Proteomics of HeLa Cells Protein Species Using Stable Isotope Labeling with Amino Acids in Cell Culture(SILAC), Two-Dimensional Gel Electrophoresis(2DE) and Nano-Liquid Chromatograpohy Coupled to an LTQ-OrbitrapMass Spectrometer

Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins

(2012) Tamar Geiger et al.   MOLECULAR & CELLULAR PROTEOMICS

ApoptoProteomics, an Integrated Database for Analysis of Proteomics Data Obtained from Apoptotic Cells

(2011) Magnus Ø. Arntzen et al.   MOLECULAR & CELLULAR PROTEOMICS

Systematic Analysis of Protein Pools, Isoforms, and Modifications Affecting Turnover and Subcellular Localization

(2011) Yasmeen Ahmad et al.   MOLECULAR & CELLULAR PROTEOMICS

A Quantitative Spatial Proteomics Analysis of Proteome Turnover in Human Cells

(2011) François-Michel Boisvert et al.   MOLECULAR & CELLULAR PROTEOMICS

A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles

(2011) Sebastian A. Wagner et al.   MOLECULAR & CELLULAR PROTEOMICS

Deep proteome and transcriptome mapping of a human cancer cell line

(2011) N. Nagaraj et al.   Molecular Systems Biology

Mapping intact protein isoforms in discovery mode using top-down proteomics

(2011) John C. Tran et al.   NATURE

Quantitative phosphoproteomics reveals link between Helicobacter pylori infection and RNA splicing modulation in host cells

(2011) Carsten Holland et al.   PROTEOMICS

Quantitative proteome analysis of the 20S proteasome of apoptotic Jurkat T cells

(2010) Frank Schmidt et al.   AMINO ACIDS

100% protein sequence coverage: a modern form of surrealism in proteomics

(2010) Bjoern Meyer et al.   AMINO ACIDS

Isobaric protein and peptide quantification: perspectives and issues

(2010) Achim Treumann et al.   Expert Review of Proteomics

Quantitative Analysis of Proteome Coverage and Recovery Rates for Upstream Fractionation Methods in Proteomics

(2010) Yuan Fang et al.   JOURNAL OF PROTEOME RESEARCH

Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis

(2010) Andreas Otto et al.   Nature Communications

Finding one's way in proteomics: a protein species nomenclature

(2009) Hartmut Schlüter et al.   Chemistry Central Journal

Isobaric Peptide Termini Labeling for MS/MS-Based Quantitative Proteomics

(2009) Christian J. Koehler et al.   JOURNAL OF PROTEOME RESEARCH

Systems-wide Analysis of a Phosphatase Knock-down by Quantitative Proteomics and Phosphoproteomics

(2009) Maximiliane Hilger et al.   MOLECULAR & CELLULAR PROTEOMICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

The speciation of the proteome

(2008) Peter R Jungblut et al.   Chemistry Central Journal

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Precision proteomics: The case for high resolution and high mass accuracy

(2008) M. Mann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteome analysis of apoptosis signaling byS-trityl-L-cysteine, a potent reversible inhibitor of human mitotic kinesin Eg5

(2008) Frank Kozielski et al.   PROTEOMICS