Rapid Phosphoproteomic and Transcriptomic Changes in the Rhizobia-legume Symbiosis

Quantitative Proteomics Reveals Dynamic Changes in the Plasma Membrane DuringArabidopsisImmune Signaling

(2012) James Mitch Elmore et al.   MOLECULAR & CELLULAR PROTEOMICS

Rhizobial and Fungal Symbioses Show Different Requirements for Calmodulin Binding to Calcium Calmodulin-Dependent Protein Kinase in Lotus japonicus

(2012) Y. Shimoda et al.   PLANT CELL

In Calmodulin–IQ Domain Complexes, the Ca2+-Free and Ca2+-Bound Forms of the Calmodulin C-Lobe Direct the N-Lobe to Different Binding Sites

(2011) D. J. Black et al.   BIOCHEMISTRY

Phosphoproteome Analysis ofLotus japonicusRoots Reveals Shared and Distinct Components of Symbiosis and Defense

(2011) Antonio Serna-Sanz et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Lipo-chitooligosaccharide Signaling in Endosymbiotic Plant-Microbe Interactions

(2011) Clare Gough et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Medicago truncatula IPD3Is a Member of the Common Symbiotic Signaling Pathway Required for Rhizobial and Mycorrhizal Symbioses

(2011) Beatrix Horváth et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

(2011) M. V. Lee et al.   Molecular Systems Biology

Proteomic and phosphoproteomic comparison of human ES and iPS cells

(2011) Douglas H Phanstiel et al.   NATURE METHODS

Gas-phase purification enables accurate, multiplexed proteome quantification with isobaric tagging

(2011) Craig D Wenger et al.   NATURE METHODS

Shotguns in the Front Line: Phosphoproteomics in Plants

(2011) H. Nakagami et al.   PLANT AND CELL PHYSIOLOGY

Extending SILAC to Proteomics of Plant Cell Lines

(2011) Wolfgang Schütz et al.   PLANT CELL

The Phosphoglucan Phosphatase Like Sex Four2 Dephosphorylates Starch at the C3-Position inArabidopsis

(2011) Diana Santelia et al.   PLANT CELL

Plastid Proteome Assembly without Toc159: Photosynthetic Protein Import and Accumulation ofN-Acetylated Plastid Precursor Proteins

(2011) Sylvain Bischof et al.   PLANT CELL

AM fungal exudates activate MAP kinases in plant cells in dependence from cytosolic Ca2+ increase

(2011) Doriana Francia et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Nuclear membranes control symbiotic calcium signaling of legumes

(2011) W. Capoen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF)

(2011) S. Reiland et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

COMPASS: A suite of pre- and post-search proteomics software tools for OMSSA

(2011) Craig D. Wenger et al.   PROTEOMICS

Comparative Proteomic Analysis of Soybean Nodulation Using a Supernodulation Mutant, SS2-2

(2010) Chae Woo LIM et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Conservation in Function of a SCAR/WAVE Component During Infection Thread and Root Hair Growth in Medicago truncatula

(2010) Akira Miyahara et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Germinating Spore Exudates from Arbuscular Mycorrhizal Fungi: Molecular and Developmental Responses in Plants and Their Regulation by Ethylene

(2010) Arijit Mukherjee et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Fungal lipochitooligosaccharide symbiotic signals in arbuscular mycorrhiza

(2010) Fabienne Maillet et al.   NATURE

Transcription Factor MtATB2: About Nodulation, Sucrose and Senescence

(2010) K. D'haeseleer et al.   PLANT AND CELL PHYSIOLOGY

Identification of legume RopGEF gene families and characterization of a Medicago truncatula RopGEF mediating polar growth of root hairs

(2010) Brendan K. Riely et al.   PLANT JOURNAL

Soybean Metabolites Regulated in Root Hairs in Response to the Symbiotic Bacterium Bradyrhizobium japonicum

(2010) L. Brechenmacher et al.   PLANT PHYSIOLOGY

Large-Scale Comparative Phosphoproteomics Identifies Conserved Phosphorylation Sites in Plants

(2010) H. Nakagami et al.   PLANT PHYSIOLOGY

Differentiation of Symbiotic Cells and Endosymbionts in Medicago truncatula Nodulation Are Coupled to Two Transcriptome-Switches

(2010) Nicolas Maunoury et al.   PLoS One

In planta changes in protein phosphorylation induced by the plant hormone abscisic acid

(2010) K. G. Kline et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis

(2009) S Karen Gomez et al.   BMC PLANT BIOLOGY

Phosphorylation of Plant Translation Initiation Factors by CK2 Enhances thein VitroInteraction of Multifactor Complex Components

(2009) Michael D. Dennis et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Comparison of Database Search Strategies for High Precursor Mass Accuracy MS/MS Data

(2009) Edward J. Hsieh et al.   JOURNAL OF PROTEOME RESEARCH

GRAS Proteins Form a DNA Binding Complex to Induce Gene Expression during Nodulation Signaling in Medicago truncatula

(2009) S. Hirsch et al.   PLANT CELL

Rearrangement of Actin Cytoskeleton Mediates Invasion of Lotus japonicus Roots by Mesorhizobium loti

(2009) K. Yokota et al.   PLANT CELL

Large-Scale Phosphoprotein Analysis in Medicago truncatula Roots Provides Insight into in Vivo Kinase Activity in Legumes

(2009) P. A. Grimsrud et al.   PLANT PHYSIOLOGY

Global Changes in the Transcript and Metabolic Profiles during Symbiotic Nitrogen Fixation in Phosphorus-Stressed Common Bean Plants

(2009) G. Hernandez et al.   PLANT PHYSIOLOGY

Enhanced Nodulation and Nitrogen Fixation in the Abscisic Acid Low-Sensitive Mutant enhanced nitrogen fixation1 of Lotus japonicus

(2009) A. Tominaga et al.   PLANT PHYSIOLOGY

Overlapping expression patterns and differential transcript levels of phosphate transporter genes in arbuscular mycorrhizal, Pi-fertilised and phytohormone-treated Medicago truncatula roots

(2009) Ulf Grunwald et al.   PLANTA

Dissection of Symbiosis and Organ Development by Integrated Transcriptome Analysis of Lotus japonicus Mutant and Wild-Type Plants

(2009) Niels Høgslund et al.   PLoS One

Tip growth: signaling in the apical dome

(2008) Yong Jik Lee et al.   CURRENT OPINION IN PLANT BIOLOGY

Goldacre paper:Auxin: at the root of nodule development?

(2008) Ulrike Mathesius   FUNCTIONAL PLANT BIOLOGY

Closely Related Members of theMedicago truncatulaPHT1 Phosphate Transporter Gene Family Encode Phosphate Transporters with Distinct Biochemical Activities

(2008) Jinyuan Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Abscisic Acid Coordinates Nod Factor and Cytokinin Signaling during the Regulation of Nodulation in Medicago truncatula

(2008) Y. Ding et al.   PLANT CELL

Fast, transient and specific intracellular ROS changes in living root hair cells responding to Nod factors (NFs)

(2008) Luis Cárdenas et al.   PLANT JOURNAL

A gene expression atlas of the model legumeMedicago truncatula

(2008) Vagner A. Benedito et al.   PLANT JOURNAL

A novel wall-associated receptor-like protein kinase gene, OsWAK1, plays important roles in rice blast disease resistance

(2008) Hui Li et al.   PLANT MOLECULAR BIOLOGY

CYCLOPS, a mediator of symbiotic intracellular accommodation

(2008) K. Yano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Receptor-Like Kinase ACR4 Restricts Formative Cell Divisions in the Arabidopsis Root

(2008) I. De Smet et al.   SCIENCE