From Light Microscopy to Analytical Scanning Electron Microscopy (SEM) and Focused Ion Beam (FIB)/SEM in Biology: Fixed Coordinates, Flat Embedding, Absolute References

Machine learning applications in cell image analysis

(2017) Andrey Kan   IMMUNOLOGY AND CELL BIOLOGY

On correction of translational misalignments between section planes in 3D EBSD

(2017) O. ŠEDIVÝ et al.   JOURNAL OF MICROSCOPY

Analytical registration of vertical image drifts in parallel beam tomographic data

(2017) Malte Storm et al.   OPTICS LETTERS

Computer vision for high content screening

(2016) Oren Z. Kraus et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

3D correlative light and electron microscopy of cultured cells using serial blockface scanning electron microscopy

(2016) Matthew R. G. Russell et al.   JOURNAL OF CELL SCIENCE

Ultra-thin resin embedding method for scanning electron microscopy of individual cells on high and low aspect ratio 3D nanostructures

(2016) A. BELU et al.   JOURNAL OF MICROSCOPY

Intravital Correlative Microscopy: Imaging Life at the Nanoscale

(2016) Matthia A. Karreman et al.   TRENDS IN CELL BIOLOGY

Electron Tomography: A Three-Dimensional Analytic Tool for Hard and Soft Materials Research

(2015) Peter Ercius et al.   ADVANCED MATERIALS

The ultrastructure of mono- and holocentric plant centromeres: an immunological investigation by structured illumination microscopy and scanning electron microscopy

(2015) Gerhard Wanner et al.   CHROMOSOMA

Ultrastructurally smooth thick partitioning and volume stitching for large-scale connectomics

(2015) Kenneth J Hayworth et al.   NATURE METHODS

Machine learning in cell biology – teaching computers to recognize phenotypes

(2013) Christoph Sommer et al.   JOURNAL OF CELL SCIENCE

Controlling FIB-SBEM slice thickness by monitoring the transmitted ion beam

(2013) K. M. BOERGENS et al.   JOURNAL OF MICROSCOPY

Simultaneous Correlative Scanning Electron and High-NA Fluorescence Microscopy

(2013) Nalan Liv et al.   PLoS One

Elastic volume reconstruction from series of ultra-thin microscopy sections

(2012) Stephan Saalfeld et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

TrakEM2 Software for Neural Circuit Reconstruction

(2012) Albert Cardona et al.   PLoS One

Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images

(2011) Anna Kreshuk et al.   PLoS One

Conservation of proteobacterial magnetosome genes and structures in an uncultivated member of the deep-branching Nitrospira phylum

(2010) C. Jogler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrastructural Characterization of the Prokaryotic Symbiosis in "Chlorochromatium aggregatum"

(2008) G. Wanner et al.   JOURNAL OF BACTERIOLOGY