The Role of Bacterial Enhancer Binding Proteins as Specialized Activators of  54-Dependent Transcription

Mechanism of Transcription Initiation at an Activator-Dependent Promoter Defined by Single-Molecule Observation

(2012) Larry J. Friedman et al.   CELL

Transcriptional regulation by the dedicated nitric oxide sensor, NorR: a route towards NO detoxification

(2011) Matthew Bush et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Coupling AAA protein function to regulated gene expression

(2011) Nicolas Joly et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Structural Basis for Promoter −10 Element Recognition by the Bacterial RNA Polymerase σ Subunit

(2011) Andrey Feklistov et al.   CELL

Single-Molecule Protein Unfolding and Translocation by an ATP-Fueled Proteolytic Machine

(2011) Marie-Eve Aubin-Tam et al.   CELL

ClpX(P) Generates Mechanical Force to Unfold and Translocate Its Protein Substrates

(2011) Rodrigo A. Maillard et al.   CELL

Single Chain Forms of the Enhancer Binding Protein PspF Provide Insights into Geometric Requirements for Gene Activation

(2011) Nicolas Joly et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A specificity determinant for phosphorylation in a response regulator prevents in vivo cross-talk and modification by acetyl phosphate

(2011) J. M. Boll et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of the co-evolved HrpR and HrpS AAA+ proteins required for Pseudomonas syringae pathogenicity

(2011) Milija Jovanovic et al.   Nature Communications

Engineered Interfaces of an AAA+ATPase Reveal a New Nucleotide-dependent Coordination Mechanism

(2010) Nicolas Joly et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Regulation of Response Regulator Autophosphorylation through Interdomain Contacts

(2010) Christopher M. Barbieri et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Nitric oxide-responsive interdomain regulation targets the σ54-interaction surface in the enhancer binding protein NorR

(2010) Matthew Bush et al.   MOLECULAR MICROBIOLOGY

A prehydrolysis state of an AAA+ ATPase supports transcription activation of an enhancer-dependent RNA polymerase

(2010) P. C. Burrows et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A proposed architecture for the central domain of the bacterial enhancer-binding proteins based on secondary structure prediction and fold recognition

(2010) Joel Osuna et al.   PROTEIN SCIENCE

An ATPase R-Finger Leaves Its Print on Transcriptional Activation

(2010) Martin Buck et al.   STRUCTURE

Engagement of Arginine Finger to ATP Triggers Large Conformational Changes in NtrC1 AAA+ ATPase for Remodeling Bacterial RNA Polymerase

(2010) Baoyu Chen et al.   STRUCTURE

Structure of the RNA Polymerase Core-Binding Domain of σ54 Reveals a Likely Conformational Fracture Point

(2009) Eunmi Hong et al.   JOURNAL OF MOLECULAR BIOLOGY

Receiver Domains Control the Active-State Stoichiometry of Aquifex aeolicus σ54 Activator NtrC4, as Revealed by Electrospray Ionization Mass Spectrometry

(2009) Joseph D. Batchelor et al.   JOURNAL OF MOLECULAR BIOLOGY

A Conserved Unfoldase Activity for the p97 AAA-ATPase in Proteasomal Degradation

(2009) Anne Beskow et al.   JOURNAL OF MOLECULAR BIOLOGY

A Lower-Order Oligomer Form of Phage Shock Protein A (PspA) Stably Associates with the Hexameric AAA+ Transcription Activator Protein PspF for Negative Regulation

(2009) Nicolas Joly et al.   JOURNAL OF MOLECULAR BIOLOGY

Activation and repression of a σN-dependent promoter naturally lacking upstream activation sequences

(2009) Odil Porrúa et al.   MOLECULAR MICROBIOLOGY

Comparative analysis of activator-E 54 complexes formed with nucleotide-metal fluoride analogues

(2009) P. C. Burrows et al.   NUCLEIC ACIDS RESEARCH

Essential roles of three enhancer sites in σ54-dependent transcription by the nitric oxide sensing regulatory protein NorR

(2009) Nicholas P. Tucker et al.   NUCLEIC ACIDS RESEARCH

The role of the conserved phenylalanine in the σ54-interacting GAFTGA motif of bacterial enhancer binding proteins

(2009) Nan Zhang et al.   NUCLEIC ACIDS RESEARCH

Dissecting the ATP hydrolysis pathway of bacterial enhancer-binding proteins

(2008) Daniel Bose et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Regulation and action of the bacterial enhancer-binding protein AAA+ domains

(2008) Baoyu Chen et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

Analysis of the Campylobacter jejuni FlgR Response Regulator Suggests Integration of Diverse Mechanisms To Activate an NtrC-Like Protein

(2008) S. N. Joslin et al.   JOURNAL OF BACTERIOLOGY

Analysis of Nucleotide Binding to P97 Reveals the Properties of a Tandem AAA Hexameric ATPase

(2008) Louise C. Briggs et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

An Intramolecular Route for Coupling ATPase Activity in AAA+Proteins for Transcription Activation

(2008) Nicolas Joly et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structure and Regulatory Mechanism of Aquifex aeolicus NtrC4: Variability and Evolution in Bacterial Transcriptional Regulation

(2008) Joseph D. Batchelor et al.   JOURNAL OF MOLECULAR BIOLOGY

Mechanism of Homotropic Control to Coordinate Hydrolysis in a Hexameric AAA+ Ring ATPase

(2008) Jörg Schumacher et al.   JOURNAL OF MOLECULAR BIOLOGY

Systematic Study of the Functions for the Residues around the Nucleotide Pocket in Simian Virus 40 AAA+ Hexameric Helicase

(2008) W. B. Greenleaf et al.   JOURNAL OF VIROLOGY

The Mcm2-7 Complex Has In Vitro Helicase Activity

(2008) Matthew L. Bochman et al.   MOLECULAR CELL

Organization of an Activator-Bound RNA Polymerase Holoenzyme

(2008) Daniel Bose et al.   MOLECULAR CELL

Modus operandi of the bacterial RNA polymerase containing the σ54promoter-specificity factor

(2008) Sivaramesh Wigneshweraraj et al.   MOLECULAR MICROBIOLOGY

Advances in bacterial promoter recognition and its control by factors that do not bind DNA

(2008) Shanil P. Haugen et al.   NATURE REVIEWS MICROBIOLOGY

The 'glutamate switch' provides a link between ATPase activity and ligand binding in AAA+ proteins

(2008) Xiaodong Zhang et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Improved Structures of Full-Length p97, an AAA ATPase: Implications for Mechanisms of Nucleotide-Dependent Conformational Change

(2008) Jason M. Davies et al.   STRUCTURE

Trapping of a Transcription Complex Using a New Nucleotide Analogue: AMP Aluminium Fluoride

(2007) Nicolas Joly et al.   JOURNAL OF MOLECULAR BIOLOGY