Previously Undescribed Plasmids Recovered from Activated Sludge Confer Tetracycline Resistance and Phenotypic Changes to Acinetobacter oleivorans DR1

Identification of Tet45, a tetracycline efflux pump, from a poultry-litter-exposed soil isolate and persistence of tet(45) in the soil

(2013) Yaqi You et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Metagenomic Profiling of Antibiotic Resistance Genes and Mobile Genetic Elements in a Tannery Wastewater Treatment Plant

(2013) Zhu Wang et al.   PLoS One

Fitness of Escherichia coli strains carrying expressed and partially silent IncN and IncP1 plasmids

(2012) Bruce Humphrey et al.   BMC MICROBIOLOGY

Broad diversity of conjugative plasmids in integron-carrying bacteria from wastewater environments

(2012) Alexandra Moura et al.   FEMS MICROBIOLOGY LETTERS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The IncF plasmid pRSB225 isolated from a municipal wastewater treatment plant’s on-site preflooder combining antibiotic resistance and putative virulence functions is highly related to virulence plasmids identified in pathogenic E. coli isolates

(2012) Daniel Wibberg et al.   PLASMID

Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees

(2011) Queenie WT Chan et al.   BMC GENOMICS

Plasmid Metagenome Reveals High Levels of Antibiotic Resistance Genes and Mobile Genetic Elements in Activated Sludge

(2011) Tong Zhang et al.   PLoS One

Phenotypic and Physiological Changes in Acinetobacter sp. Strain DR1 with Exogenous Plasmid

(2010) Jungsoon Park et al.   CURRENT MICROBIOLOGY

Trade-off between antibiotic resistance and biological fitness in Acinetobacter sp. strain DR1

(2010) Yoon-Suk Kang et al.   ENVIRONMENTAL MICROBIOLOGY

Complete Genome Sequence of the Diesel-Degrading Acinetobacter sp. Strain DR1

(2010) J. Jung et al.   JOURNAL OF BACTERIOLOGY

Antibiotic resistance genes in water environment

(2009) Xu-Xiang Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Wastewater bacterial communities bring together broad-host range plasmids, integrons and a wide diversity of uncharacterized gene cassettes

(2009) Alexandra Moura et al.   RESEARCH IN MICROBIOLOGY

Two Different Tetracycline Resistance Mechanisms, Plasmid-Carried tet(L) and Chromosomally Located Transposon-Associated tet(M), Coexist in Lactobacillus sakei Rits 9

(2008) M. S. Ammor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Aggressive assembly of pyrosequencing reads with mates

(2008) Jason R. Miller et al.   BIOINFORMATICS

Piggery manure used for soil fertilization is a reservoir for transferable antibiotic resistance plasmids

(2008) Chu Thi Thanh Binh et al.   FEMS MICROBIOLOGY ECOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology

(2008) Rafael Szczepanowski et al.   JOURNAL OF BIOTECHNOLOGY

Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant

(2008) Andreas Schlüter et al.   JOURNAL OF BIOTECHNOLOGY