A Microbial Signature Approach to Identify Fecal Pollution in the Waters Off an Urbanized Coast of Lake Michigan

Acinetobacter, Aeromonas and Trichococcus populations dominate the microbial community within urban sewer infrastructure

(2012) J. L. VandeWalle et al.   ENVIRONMENTAL MICROBIOLOGY

A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters

(2012) Susan M. Huse et al.   PLoS One

Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations

(2011) Orin C. Shanks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lachnospiraceae and Bacteroidales Alternative Fecal Indicators Reveal Chronic Human Sewage Contamination in an Urban Harbor

(2011) Ryan J. Newton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Spatio-temporal distribution of organic and inorganic pollutants from Lake Geneva (Switzerland) reveals strong interacting effects of sewage treatment plant and eutrophication on microbial abundance

(2011) Florian Thevenon et al.   CHEMOSPHERE

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

(2011) Lucie Zinger et al.   PLoS One

Detection of the human specific Bacteroides genetic marker provides evidence of widespread sewage contamination of stormwater in the urban environment

(2011) Elizabeth P. Sauer et al.   WATER RESEARCH

A review of personal care products in the aquatic environment: Environmental concentrations and toxicity

(2010) John M. Brausch et al.   CHEMOSPHERE

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Performance of PCR-Based Assays TargetingBacteroidalesGenetic Markers of Human Fecal Pollution in Sewage and Fecal Samples

(2010) Orin C. Shanks et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Analysis of human and animal fecal microbiota for microbial source tracking

(2010) Jung Eun Lee et al.   ISME Journal

Characterization of Coastal Urban Watershed Bacterial Communities Leads to Alternative Community-Based Indicators

(2010) Cindy H. Wu et al.   PLoS One

Impact of urbanization and agriculture on the occurrence of bacterial pathogens and stx genes in coastal waterbodies of central California

(2010) Sarah P. Walters et al.   WATER RESEARCH

Quantitative PCR for Genetic Markers of Human Fecal Pollution

(2009) O. C. Shanks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and population structure of sewage-derived microorganisms in wastewater treatment plant influent

(2009) S. L. McLellan et al.   ENVIRONMENTAL MICROBIOLOGY

Temporal and spatial variability in nearshore bacterioplankton communities of Lake Michigan

(2009) Sabrina R. Mueller-Spitz et al.   FEMS MICROBIOLOGY ECOLOGY

The coastal environment and human health: microbial indicators, pathogens, sentinels and reservoirs

(2008) Jill R Stewart et al.   Environmental Health

Storm Drains are Sources of Human Fecal Pollution during Dry Weather in Three Urban Southern California Watersheds

(2008) Bram Sercu et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

High Sensitivity of Children to Swimming-Associated Gastrointestinal Illness

(2008) Timothy J. Wade et al.   EPIDEMIOLOGY

Harmful algal blooms and eutrophication: Examining linkages from selected coastal regions of the United States

(2008) Donald M. Anderson et al.   HARMFUL ALGAE

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE

The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing

(2008) Les Dethlefsen et al.   PLOS BIOLOGY

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

(2008) Susan M. Huse et al.   PLoS Genetics