An integrated map of HIV genome-wide variation from a population perspective

A new ensemble coevolution system for detecting HIV-1 protein coevolution

(2015) Guangdi Li et al.   Biology Direct

A stably expressed llama single-domain intrabody targeting Rev displays broad-spectrum anti-HIV activity

(2014) Eline Boons et al.   ANTIVIRAL RESEARCH

COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification

(2014) Daniel Struck et al.   NUCLEIC ACIDS RESEARCH

HIV-1 Gag C-terminal amino acid substitutions emerging under selective pressure of protease inhibitors in patient populations infected with different HIV-1 subtypes

(2014) Guangdi Li et al.   Retrovirology

Synonymous site conservation in the HIV-1 genome

(2013) Itay Mayrose et al.   BMC EVOLUTIONARY BIOLOGY

Synthesized Peptide Inhibitors of HIV-1 gp41-dependent Membrane Fusion

(2013) Yuxian He   CURRENT PHARMACEUTICAL DESIGN

Elvitegravir/Cobicistat/Emtricitabine/Tenofovir Disoproxil Fumarate Single-Tablet Regimen (Stribild®): A Review of Its Use in the Management of HIV-1 Infection in Adults

(2013) Caroline M. Perry   DRUGS

A global approach to HIV-1 vaccine development

(2013) Kathryn E. Stephenson et al.   IMMUNOLOGICAL REVIEWS

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other tools

(2013) Andrea-Clemencia Pineda-Peña et al.   INFECTION GENETICS AND EVOLUTION

HIV-AIDS: much accomplished, much to do

(2013) Anthony S Fauci et al.   NATURE IMMUNOLOGY

Variability of HIV-1 Genomes among Children and Adolescents from São Paulo, Brazil

(2013) Sabri Saeed Sanabani et al.   PLoS One

Functional conservation of HIV-1 Gag: implications for rational drug design

(2013) Guangdi Li et al.   Retrovirology

On the Role of Aggregation Prone Regions in Protein Evolution, Stability, and Enzymatic Catalysis: Insights from Diverse Analyses

(2013) Patrick M. Buck et al.   PLoS Computational Biology

The Analysis of Near Full-Length Genome Sequences of HIV Type 1 Subtype A Viruses from Russia Supports the Monophyly of Major Intrasubtype Clusters

(2012) Aurora Fernández-García et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Creating genetic resistance to HIV

(2012) John C Burnett et al.   CURRENT OPINION IN IMMUNOLOGY

Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2

(2012) Morgane Rolland et al.   NATURE

The structural biology of HIV-1: mechanistic and therapeutic insights

(2012) Alan Engelman et al.   NATURE REVIEWS MICROBIOLOGY

Immune-Correlates Analysis of an HIV-1 Vaccine Efficacy Trial

(2012) Barton F. Haynes et al.   NEW ENGLAND JOURNAL OF MEDICINE

The biased nucleotide composition of the HIV genome: a constant factor in a highly variable virus

(2012) Antoinette C van der Kuyl et al.   Retrovirology

The origin and diversity of the HIV-1 pandemic

(2012) Joris Hemelaar   TRENDS IN MOLECULAR MEDICINE

Computational Design of a PDZ Domain Peptide Inhibitor that Rescues CFTR Activity

(2012) Kyle E. Roberts et al.   PLoS Computational Biology

Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection

(2012) Matthew R. Henn et al.   PLoS Pathogens

Global trends in molecular epidemiology of HIV-1 during 2000–2007

(2011) Joris Hemelaar et al.   AIDS

Molecular dynamics simulations and drug discovery

(2011) Jacob D Durrant et al.   BMC BIOLOGY

Protein intrinsic disorder as a flexible armor and a weapon of HIV-1

(2011) Bin Xue et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Demographic Processes Affect HIV-1 Evolution in Primary Infection before the Onset of Selective Processes

(2011) J. T. Herbeck et al.   JOURNAL OF VIROLOGY

Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial

(2011) Morgane Rolland et al.   NATURE MEDICINE

Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints

(2011) Joke Snoeck et al.   Retrovirology

2Struc: the secondary structure server

(2010) D. P. Klose et al.   BIOINFORMATICS

A Simple Definition of Structural Regions in Proteins and Its Use in Analyzing Interface Evolution

(2010) Emmanuel D. Levy   JOURNAL OF MOLECULAR BIOLOGY

Protein annotation and modelling servers at University College London

(2010) D. W. A. Buchan et al.   NUCLEIC ACIDS RESEARCH

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Near Full-Length Genetic Analysis of HIV Sequences Derived from Cyprus: Evidence of a Highly Polyphyletic and Evolving Infection

(2009) Ioanna Kousiappa et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Entry inhibitors in the treatment of HIV-1 infection

(2009) John C. Tilton et al.   ANTIVIRAL RESEARCH

PreDisorder: ab initio sequence-based prediction of protein disordered regions

(2009) Xin Deng et al.   BMC BIOINFORMATICS

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Development of a Panel of Well-Characterized Human Immunodeficiency Virus Type 1 Isolates from Newly Diagnosed Patients Including Acute and Recent Infections

(2008) A. Fernández-García et al.   AIDS RESEARCH AND HUMAN RETROVIRUSES

Prediction of disordered regions in proteins based on the meta approach

(2008) T. Ishida et al.   BIOINFORMATICS

Protective HLA Class I Alleles That Restrict Acute-Phase CD8+ T-Cell Responses Are Associated with Viral Escape Mutations Located in Highly Conserved Regions of Human Immunodeficiency Virus Type 1

(2008) Y. E. Wang et al.   JOURNAL OF VIROLOGY

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE