Article
Biochemistry & Molecular Biology
Joaquin C. B. Nunez, Stephen Rong, Alejandro Damian-Serrano, John T. Burley, Rebecca G. Elyanow, David A. Ferranti, Kimberly B. Neil, Henrik Glenner, Magnus Alm Rosenblad, Anders Blomberg, Kerstin Johannesson, David M. Rand
Summary: Studies show that 4% of genes in the barnacle genome undergo balancing selection across the entire range of the species, involving functions such as ion regulation, pain reception, and heat tolerance. The data also reveal complex population structure and high divergence between Atlantic and Pacific populations.
MOLECULAR BIOLOGY AND EVOLUTION
(2021)
Article
Biochemistry & Molecular Biology
Joaquin C. B. Nunez, Stephen Rong, David A. Ferranti, Alejandro Damian-Serrano, Kimberly B. Neil, Henrik Glenner, Rebecca G. Elyanow, Bianca R. P. Brown, Magnus Alm Rosenblad, Anders Blomberg, Kerstin Johannesson, David M. Rand
Summary: The northern acorn barnacle is a robust system for studying genetic adaptations to highly heterogeneous environments. A study across various habitats in the North Atlantic basin discovered 382 genomic regions containing SNPs consistently zonated, indicating spatially heterogeneous selection is a general feature for this species. These findings suggest that natural selection can maintain functional genetic variation in such environments.
Article
Biochemistry & Molecular Biology
Andrew H. Moeller
Summary: Balancing selection maintains allelic diversity in multidrug efflux pumps of gut bacteria, which may play an important role in their adaptation and fitness. Metagenomic scans also identified other proteins influenced by balancing selection.
Article
Biochemistry & Molecular Biology
Lucy Peters, Jisca Huisman, Loeske E. B. Kruuk, Josephine M. Pemberton, Susan E. Johnston
Summary: Sexually selected traits exhibit large variation and rapid evolution in the animal kingdom, yet genetic variation persists within populations despite directional selection. Understanding the genetic architecture of sexually selected traits, such as antler morphology in red deer, can shed light on evolutionary drivers and constraints at the genomic level. The study on red deer antler traits revealed high repeatability, heritability, and polygenic architecture, suggesting that genetic covariances among traits and pleiotropy may contribute to the maintenance of genetic variation in antler morphology.
Review
Immunology
Oyebola O. Oyesola, Camila Oliveira Silva Souza, P'ng Loke
Summary: Helminth infections affect over 2 billion people worldwide, with host genetics and environmental factors playing critical roles in regulating immune responses. Studying the interactions between environment and genetic factors in helminth infections could lead to the development of new preventive and therapeutic options.
FRONTIERS IN IMMUNOLOGY
(2022)
Article
Ecology
Tim Janicke, Elodie Chapuis, Stefania Meconcelli, Nicolas Bonel, Boris Delahaie, Patrice David
Summary: Understanding how environmental stress influences the genetic variance-covariance matrix of body size and reproductive success in hermaphroditic organisms is crucial for predicting evolutionary responses. Our study on the freshwater snail Physa acuta showed that environmental stress increased selection pressure on both sexes, while maintaining relatively stable genetic architecture. Importantly, there was no strong genetic correlation between male and female reproductive traits, indicating limited evolutionary coupling.
JOURNAL OF ANIMAL ECOLOGY
(2022)
Article
Ecology
Veronica Noe Ibanez, Morgane van Antro, Cristian Pena-Ponton, Slavica Milanovic-Ivanovic, Cornelis A. M. Wagemaker, Fleur Gawehns, Koen J. F. Verhoeven
Summary: DNA methylation in plant genomes can provide genealogical information at short time scales, but its reliability at micro-evolutionary time scales is unclear due to meta-stability and environmental effects. In a study of common dandelion, differentially methylated cytosines (DMCs) were induced by light treatment, with genetic divergence between accessions correlating strongly with overall methylation profiles. However, environmental effects may partly dilute the genealogical signal in CG context. Methylation information can be used to reconstruct micro-evolutionary genealogy in plants lacking genetic variation.
JOURNAL OF EVOLUTIONARY BIOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Ulas Isildak, Alessandro Stella, Matteo Fumagalli
Summary: Balancing selection is an important adaptive mechanism for a wide range of phenotypes, but its detection from genomic data is challenging. In this study, two deep neural networks were developed and implemented to accurately predict loci under recent selection, with convolutional neural network (CNN) outperforming artificial neural network (ANN). The trained networks successfully identified loci under recent selection in European populations and within the MEFV gene region, highlighting the potential functional relevance of common variants predicted to be under incomplete sweep.
MOLECULAR ECOLOGY RESOURCES
(2021)
Article
Biochemistry & Molecular Biology
Farah Abdul-Rahman, Daniel Tranchina, David Gresham
Summary: The study demonstrates that in static environments, a small number of high-fitness genotypes dominate the population, leading to decreased genetic diversity. In contrast, fluctuating environments are enriched in genotypes with neutral fitness effects, contributing to the maintenance of genetic diversity. Oscillatory behaviors in response to environmental fluctuation play a role in balancing selection and maintaining genetic diversity.
MOLECULAR BIOLOGY AND EVOLUTION
(2021)
Article
Green & Sustainable Science & Technology
Julian Amon, Margarethe Rammerstorfer, Karl Weinmayer
Summary: The study demonstrates that a passive asset selection strategy based on environmental criteria does not necessarily lead to decreased financial performance, but may even improve it. Combining screening and environmental-scoring-based asset allocation provides a viable option for environmentally responsible investors. Furthermore, a firm's environmental performance may impact its risk premium.
Article
Environmental Sciences
Viviane Cordovez, Cristina Rotoni, Francisco Dini-Andreote, Ben Oyserman, Victor J. Carrion, Jos M. Raaijmakers
Summary: Plant microbiome assembly is driven by root exudates and influenced by factors such as soil type, plant developmental stage, and genotype. Over successive cultivation cycles, divergence in microbiome assembly between modern and wild tomato genotypes significantly amplifies, leading to distinct compositions in the rhizosphere microbiome. Specific amplicon sequence variants in the rhizosphere microbiome are associated with early and late successions, with differences observed in taxonomic enrichments between modern and wild tomato genotypes.
SCIENCE OF THE TOTAL ENVIRONMENT
(2021)
Article
Mathematics, Interdisciplinary Applications
Phillip Sherlock, Christine DiStefano, Brian Habing
Summary: Regression mixture models can be used to test and model differential effects in heterogeneous populations, with constrained predictor means enumeration appearing advantageous. Researchers should estimate the K and K+1 unconditional models, adding the C on X paths to investigate model instability and potential misspecification, while the Aim 2 simulation study found that RMMs are robust to predictor variance differences, even in the presence of moderate violations of assumptions.
STRUCTURAL EQUATION MODELING-A MULTIDISCIPLINARY JOURNAL
(2022)
Editorial Material
Biochemistry & Molecular Biology
Rebecca C. Fuller
Summary: In this study, visual detection models were used to estimate the visibility of male color patterns in Trinidadian guppies and their predators. The findings suggest that there is no consistent increase in conspicuousness in low predation populations, challenging the validity and repeatability of this classic example of parallel evolution.
Article
Ecology
Sylvain Glemin
Summary: Self-fertilization affects genetic functioning, increasing homozygosity and reducing recombination, thus impacting balancing selection. Overdominance-like selection is strongly influenced by selfing, while negative frequency dependent selection is barely affected.
Article
Environmental Sciences
Jiong Lu, Qi Zhou, Weixiao Qi, Shen Qu, Jun Bi
Summary: As a regional agglomeration, industrial parks in China bring huge benefits to economic development, but they also result in significant environmental externalities. This study empirically investigates the effects of establishing industrial parks on emissions of various pollutants like COD, NH3, SO2, and dust, and finds that the effects vary across different scales and types of industrial parks. While firms within industrial parks are able to reduce their environmental pollution, the overall emissions in the regions where the parks are located tend to increase, mainly due to the expansion of production scale and the increase of pollution-intensive industries. The study suggests the establishment of environmentally-friendly industrial parks by rational industrial layout planning, construction of pollution treatment facilities, raising environmental thresholds for entry, and promoting technological innovation.
SCIENCE OF THE TOTAL ENVIRONMENT
(2023)