In-Depth Analysis of Exoproteomes from Marine Bacteria by Shotgun Liquid Chromatography-Tandem Mass Spectrometry: the Ruegeria pomeroyi DSS-3 Case-Study

Proteogenomics and systems biology: quest for the ultimate missing parts

(2010) Jean Armengaud   Expert Review of Proteomics

Computational Prediction and Experimental Validation of Signal Peptide Cleavages in the Extracellular Proteome of a Natural Microbial Community

(2010) Brian K. Erickson et al.   JOURNAL OF PROTEOME RESEARCH

Expanding the Known Repertoire of Virulence Factors Produced byBacillus cereusthrough Early Secretome Profiling in Three Redox Conditions

(2010) Gérémy Clair et al.   MOLECULAR & CELLULAR PROTEOMICS

A toolbox for validation of mass spectrometry peptides identification and generation of database: IRMa

(2009) Véronique Dupierris et al.   BIOINFORMATICS

A comprehensive assessment of N-terminal signal peptides prediction methods

(2009) Khar Choo et al.   BMC BIOINFORMATICS

Horizontal Gene Transfer of the Secretome Drives the Evolution of Bacterial Cooperation and Virulence

(2009) Teresa Nogueira et al.   CURRENT BIOLOGY

A perfect genome annotation is within reach with the proteomics and genomics alliance

(2009) Jean Armengaud   CURRENT OPINION IN MICROBIOLOGY

High abundance of virulence gene homologues in marine bacteria

(2009) Olof P. Persson et al.   ENVIRONMENTAL MICROBIOLOGY

Identification and Characterization of Hemolysin-Like Proteins Similar to RTX Toxin in Pasteurella pneumotropica

(2009) H. Sasaki et al.   JOURNAL OF BACTERIOLOGY

Comparative Proteomic Analysis ofBotrytis cinereaSecretome

(2009) Punit Shah et al.   JOURNAL OF PROTEOME RESEARCH

Environmental Proteomics: a Paradigm Shift in Characterizing Microbial Activities at the Molecular Level

(2009) M. Keller et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods

(2009) N. A. Leversen et al.   MICROBIOLOGY-SGM

Proteomics-based Refinement ofDeinococcus desertiGenome Annotation Reveals an Unwonted Use of Non-canonical Translation Initiation Codons

(2009) Mathieu Baudet et al.   MOLECULAR & CELLULAR PROTEOMICS

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteomic analysis of the secretome of human umbilical vein endothelial cells using a combination of free-flow electrophoresis and nanoflow LC-MS/MS

(2009) David Guillen Tunica et al.   PROTEOMICS

Insight into the core and variant exoproteomes of Listeria monocytogenes species by comparative subproteomic analysis

(2009) Emilie Dumas et al.   PROTEOMICS

Environmental proteomics: Analysis of structure and function of microbial communities

(2009) Thomas Schneider et al.   PROTEOMICS

Secretion and subcellular localizations of bacterial proteins: a semantic awareness issue

(2009) Mickaël Desvaux et al.   TRENDS IN MICROBIOLOGY

Alliance of Proteomics and Genomics to Unravel the Specificities of Sahara Bacterium Deinococcus deserti

(2009) Arjan de Groot et al.   PLoS Genetics

Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea

(2009) Yvan Zivanovic et al.   GENOME BIOLOGY

Diversity, ecology, and genomics of the Roseobacter clade: a short overview

(2008) Thorsten Brinkhoff et al.   ARCHIVES OF MICROBIOLOGY

Marine molecular biology: An emerging field of biological sciences

(2008) Narsinh L. Thakur et al.   BIOTECHNOLOGY ADVANCES

Application of proteomics in biotechnology – Microbial proteomics

(2008) Djuro Josic et al.   Biotechnology Journal

LocateP: Genome-scale subcellular-location predictor for bacterial proteins

(2008) Miaomiao Zhou et al.   BMC BIOINFORMATICS

Identification and Characterization of a Repeat-in-Toxin Gene Cluster in Vibrio anguillarum

(2008) L. Li et al.   INFECTION AND IMMUNITY

An Assessment of Software Solutions for the Analysis of Mass Spectrometry Based Quantitative Proteomics Data

(2008) Lukas N. Mueller et al.   JOURNAL OF PROTEOME RESEARCH

Genetic or chemical protease inhibition causes significant changes in the Bacillus subtilis exoproteome

(2008) Lidia Westers et al.   PROTEOMICS

Does Trypsin Cut Before Proline?

(2007) Jesse Rodriguez et al.   JOURNAL OF PROTEOME RESEARCH