Molecular Detection, Quantification, and Diversity Evaluation of Microalgae

Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness

(2011) Virginia Edgcomb et al.   ISME Journal

Marine-Freshwater Colonizations of Haptophytes Inferred from Phylogeny of Environmental 18S rDNA Sequences

(2011) KAMRAN SHALCHIAN-TABRIZI et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

New Approach Using the Real-Time PCR Method for Estimation of the Toxic Marine Dinoflagellate Ostreopsis cf. ovata in Marine Environment

(2011) Federico Perini et al.   PLoS One

Plastid 16S rRNA Gene Diversity among Eukaryotic Picophytoplankton Sorted by Flow Cytometry from the South Pacific Ocean

(2011) Xiao Li Shi et al.   PLoS One

Selection in Coastal Synechococcus (Cyanobacteria) Populations Evaluated from Environmental Metagenomes

(2011) Vera Tai et al.   PLoS One

Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists

(2011) H. S. Yoon et al.   SCIENCE

Quantitative PCR Coupled with Melt Curve Analysis for Detection of SelectedPseudo-nitzschiaspp. (Bacillariophyceae) from the Northwestern Mediterranean Sea

(2010) Karl B. Andree et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Parallel Analyses of Alexandrium catenella Cell Concentrations and Shellfish Toxicity in the Puget Sound

(2010) S. T. Dyhrman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Toward routine, DNA-based detection methods for marine pests

(2010) Nathan J. Bott et al.   BIOTECHNOLOGY ADVANCES

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

(2010) Fabien Burki et al.   BMC EVOLUTIONARY BIOLOGY

Telonemia-specific environmental 18S rDNA PCR reveals unknown diversity and multiple marine-freshwater colonizations

(2010) Jon Bråte et al.   BMC MICROBIOLOGY

Next-Generation Sequencing Techniques for Eukaryotic Microorganisms: Sequencing-Based Solutions to Biological Problems

(2010) Minou Nowrousian   EUKARYOTIC CELL

Composition and genetic diversity of picoeukaryotes in subtropical coastal waters as revealed by 454 pyrosequencing

(2010) Man Kit Cheung et al.   ISME Journal

Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts

(2010) Dikla Man-Aharonovich et al.   ISME Journal

Monitoring of phytoplankton community structure using terminal restriction fragment length polymorphism (T-RFLP)

(2010) Sungbae Joo et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Development of an oligonucleotide microarray for the detection and monitoring of marine dinoflagellates

(2010) Luca Galluzzi et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Molecular detection of harmful algal blooms (HABs) using locked nucleic acids and bead array technology

(2010) Mara R. Diaz et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms

(2010) RALPH MEDINGER et al.   MOLECULAR ECOLOGY

Limits to gene flow in a cosmopolitan marine planktonic diatom

(2010) G. Casteleyn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using the molecular toolbox to compare harmful algal blooms in upwelling systems

(2010) R.M. Kudela et al.   PROGRESS IN OCEANOGRAPHY

Application of real-time PCR assay for detection and quantification of bloom-forming diatom Chaetoceros tenuissimus Meunier

(2010) Kensuke Toyoda et al.   Plankton & Benthos Research

Metagenomic Pyrosequencing and Microbial Identification

(2009) J. F. Petrosino et al.   CLINICAL CHEMISTRY

A quantitative real-time PCR assay for the identification and enumeration of Alexandrium cysts in marine sediments

(2009) D.L. Erdner et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Photosynthetic picoeukaryote community structure in the South East Pacific Ocean encompassing the most oligotrophic waters on Earth

(2009) Cécile Lepère et al.   ENVIRONMENTAL MICROBIOLOGY

Detection and quantification of Karenia mikimotoi using real-time nucleic acid sequence-based amplification with internal control RNA (IC-NASBA)

(2009) Robert M. Ulrich et al.   HARMFUL ALGAE

Culture-independent identification of gut bacteria correlated with the onset of diabetes in a rat model

(2009) Luiz FW Roesch et al.   ISME Journal

Analysis of rRNA gene content in the Mediterranean dinoflagellate Alexandrium catenella and Alexandrium taylori: implications for the quantitative real-time PCR-based monitoring methods

(2009) Luca Galluzzi et al.   JOURNAL OF APPLIED PHYCOLOGY

PHENOTYPIC VARIATION AND GENOTYPIC DIVERSITY IN A PLANKTONIC POPULATION OF THE TOXIGENIC MARINE DINOFLAGELLATE ALEXANDRIUM TAMARENSE (DINOPHYCEAE)1

(2009) Tilman J. Alpermann et al.   JOURNAL OF PHYCOLOGY

Development of compound microsatellite markers in red-tide-causing dinoflagellateAkashiwo sanguinea(Dinophyceae)

(2009) S-Y. CHO et al.   Molecular Ecology Resources

Ten microsatellite markers for the freshwater diatomSellaphora capitata

(2009) KATHARINE M. EVANS et al.   Molecular Ecology Resources

Metatranscriptomics reveals unique microbial small RNAs in the ocean’s water column

(2009) Yanmei Shi et al.   NATURE

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Development of a SYTO9 Based Real-Time PCR Probe for Detection and Quantification of Toxic Dinoflagellate Karlodinium Veneficum (Dinophyceae) in Environmental Samples

(2009) Tae-Gyu Park et al.   PHYCOLOGIA

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Feasibility of Transferring Fluorescent In Situ Hybridization Probes to an 18S rRNA Gene Phylochip and Mapping of Signal Intensities

(2008) K. Metfies et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Feasibility of Assessing the Community Composition of Prasinophytes at the Helgoland Roads Sampling Site with a DNA Microarray

(2008) C. Gescher et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quantification of Diatom and Dinoflagellate Biomasses in Coastal Marine Seawater Samples by Real-Time PCR

(2008) A. Godhe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Loop-mediated isothermal amplification method for rapid detection of the toxic dinoflagellateAlexandrium, which causes algal blooms and poisoning of shellfish

(2008) Li Wang et al.   FEMS MICROBIOLOGY LETTERS

Multiple simultaneous detection of Harmful Algal Blooms (HABs) through a high throughput bead array technology, with potential use in phytoplankton community analysis

(2008) G. Scorzetti et al.   HARMFUL ALGAE

PCR-Based Diversity Estimates of Artificial and Environmental 18S rRNA Gene Libraries

(2008) MARIANNE POTVIN et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

INTER- AND INTRASPECIFIC COMMUNITY STRUCTURE WITHIN THE DIATOM GENUSPSEUDO-NITZSCHIA(BACILLARIOPHYCEAE)

(2008) Katherine A. Hubbard et al.   JOURNAL OF PHYCOLOGY

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

The development and impact of 454 sequencing

(2008) Jonathan M Rothberg et al.   NATURE BIOTECHNOLOGY

Using quantitative real-time PCR to study competition and community dynamics among Delaware Inland Bays harmful algae in field and laboratory studies

(2007) Sara M. Handy et al.   HARMFUL ALGAE