Article
Chemistry, Multidisciplinary
Mingyu Zheng, Xiaoping Zhang, Yihao Cheng, Lili Sun, Xinglei Zhang
Summary: Collisional activation of protonated phenylalanine derivatives deamination products can lead to hydroxyl skeletal rearrangement or cyclization reaction, resulting in the formation of hydroxylbenzyl cation after elimination of CH2CO. Different experiments and calculations were performed to investigate the dissociation mechanisms of these deamination products. Route 1 involves ring-opening and hydroxyl transfer to form 3-hydroxy-1-oxo-3-phenylpropan-1-ylium, while routes 2 and 3 involve cyclization and hydroxyl transfer reactions. DFT calculations indicate that route 1 is thermodynamically favored over routes 2 and 3.
FRONTIERS IN CHEMISTRY
(2023)
Article
Chemistry, Multidisciplinary
Ana F. F. Lucena, Leonor Maria, John K. K. Gibson, Joaquim Marcalo
Summary: Gas-phase experiments were conducted to study the basic interactions between the uranyl(VI) ion and selected amino acids using electrospray ionization quadrupole ion trap mass spectrometry. The results revealed that the binding strength of neutral amino acids to uranyl decreased in the order His > Asp > Cys > Gly, similar to their proton affinities. In negative ion mode, the dissociation tendency of the amino acids was found to be Gly >> His ≈ Cys > Asp, indicating enhanced binding to uranyl of the doubly deprotonated amino acids formed in CID.
APPLIED SCIENCES-BASEL
(2023)
Article
Chemistry, Analytical
Fong-Fu Hsu
Summary: This study utilized HCD MS2 spectra to investigate the fragmentation processes of ceramide molecules, allowing for accurate definition of ceramide structures based on observed sets of fragment ions reflecting the fatty acyl chain and LCB. The approach permits differentiation of isomeric structures and detailed characterization of ceramide species in biological samples.
ANALYTICA CHIMICA ACTA
(2021)
Review
Pharmacology & Pharmacy
Manman Qin, Yuqing Qian, Lu Huang, Chao Zhong, Mingdong Li, Jun Yu, Huanwen Chen
Summary: Extraction electrospray ionization mass spectrometry (EESI-MS) enables effective ionization of trace molecules in complex samples without sample pretreatment, providing high sensitivity, selectivity, and response speed. It also allows for advanced functionalization of high-energy molecular species. This article systematically reviews the effects of operating conditions on the analytical performance of EESI-MS for various pharmaceutical compounds and introduces its potential application in molecular functionalization for drug discovery.
FRONTIERS IN PHARMACOLOGY
(2023)
Article
Biochemical Research Methods
Michael Goetze, Lukasz Polewski, Leila Bechtella, Kevin Pagel
Summary: This article introduces a 3D-printable nano-electrospray ionization (nano-ESI) source for Bruker instruments, which can be assembled by anyone with access to a 3D printer. The source can be fitted to any Bruker mass spectrometer with an ionBooster ESI source and only requires minor, reversible changes to the original Bruker hardware. The general utility of the source was demonstrated by recording high-resolution MS spectra of small molecules, intact proteins, as well as complex biological samples in negative and positive ion mode on two different Bruker instruments.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
(2023)
Article
Multidisciplinary Sciences
Amanda Gisler, Kapil Dev Singh, Jiafa Zeng, Martin Osswald, Mo Awchi, Fabienne Decrue, Felix Schmidt, Noriane A. Sievi, Xing Chen, Jakob Usemann, Urs Frey, Malcolm Kohler, Xue Li, Pablo Sinues
Summary: Exhaled breath analysis provides valuable molecular-level information and has promising potential for precision medicine. However, the lack of validation in multicenter trials hinders the transition of breath tests into routine clinical practice. In this study, an interoperability framework was developed and applied, revealing a technical variability of approximately 20% and identifying a core signature of the human exhaled metabolome. The results showed high inter-subject variability for certain metabolic classes but relative stability in other regions, such as the TCA cycle. This framework and the overview of metabolic coverage will pave the way for future large-scale multicenter trials.
Article
Biochemical Research Methods
Daiki Asakawa, Kazumi Saikusa
Summary: We propose using substituted benzyl ammonium species as thermometer ions to characterize the internal energy distribution of ions produced by electrospray ionization. Experimental results show that the activation of benzyl ammonium species preferentially generates benzyl cations. Calculations reveal that the threshold energies of fragmentation for the tested model ions are significantly lower than those of conventional 4-substituted benzylpyridinium thermometer ions. Furthermore, the internal energies of the ions depend on the radiofrequency voltage of the ion funnel.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
(2022)
Article
Chemistry, Physical
Julia Burykina, Valentine P. Ananikov
Summary: This concept article discusses the application possibilities of electrospray ionization mass spectrometry (Photo-Chem-ESI-MS) in mechanistic investigation of photochemical reactions. It provides a brief review of key techniques for coupling photochemical reactions with ESI-MS online monitoring, and discusses representative customized advanced tools aimed at detecting specific intermediates in light on/light off mechanistic studies of photochemical reactions. The design of dedicated Photo-Chem-ESI-MS setups is highlighted as a focus of modern research, enabling more profound insight into the field.
Review
Chemistry, Analytical
Bin Hu, Zhong-Ping Yao
Summary: This article reviews the technical aspects and important applications of wooden-tip ESI-MS in various fields. Wooden-tip ESI-MS has shown significant achievements in the past 10 years and has the potential for further development and application.
ANALYTICA CHIMICA ACTA
(2022)
Article
Biochemical Research Methods
Amanda R. Bubas, Evan Perez, Luke J. Metzler, Scott D. Rissler, Michael J. Van Stipdonk
Summary: This study investigates the collision-induced dissociation of [UO2(NO3)(3)](-) and [UO2(NO3)(2)(O-2)](-), as well as the CID of [UO2(NO3)(O-2)](-) and the resulting product ions. DFT calculations identified pathways for the generation of product ions, revealing that the composition of [UO2(O)(NO2)](-) is [UO2(O)(NO2)](-) rather than [UO2(NO3)](-).
JOURNAL OF MASS SPECTROMETRY
(2021)
Article
Biochemical Research Methods
Rong Chen, Hannah Marie Brown, R. Graham Cooks
Summary: DESI-MS is a suitable method for intraoperative tissue analysis due to its minimal sample preparation and quick molecular diagnostics. Combining multiple metabolites, such as GABA, creatine, carnitine, and hexol, with the established biomarker NAA, allows for improved accuracy in distinguishing brain parenchyma from glioma. The implementation of diagnostic ion abundance ratios based on these metabolites can enhance method robustness and strengthen discriminatory power, leading to an improved DESI-MS method for glioma diagnosis.
ANALYTICAL AND BIOANALYTICAL CHEMISTRY
(2021)
Article
Chemistry, Physical
Neville J. A. Coughlan, Weiqiang Fu, Mircea Guna, Bradley B. Schneider, J. C. Yves Le Blanc, J. Larry Campbell, W. Scott Hopkins
Summary: PABA was electrosprayed from mixtures of protic and aprotic solvents, resulting in the formation of two prototropic isomers in the gas phase, with their relative populations depending on the composition of the electrospray solvent. Differential mobility spectrometry (DMS) was used to separate the two ion populations in the gas phase, showing that the N-protonated isomer had a more negative CV shift than the O-protonated isomer. The study also demonstrated that CCSD vertical excitation energies and vertical gradient Franck-Condon simulations provided near-quantitative agreement with the measured spectral features, supporting the spectral assignments.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
(2021)
Article
Chemistry, Multidisciplinary
Virginia G. Rodriguez, Peter C. Burns
Summary: Electrospray ionization tandem mass spectrometry was used to investigate the gas phase fragmentation of uranyl peroxide nanoclusters with different bridging ligands. The clusters yielded uranium monomers and dimers with specific mass-to-charge ratios, as well as UO6- anions resulting from the cleavage of a uranyl ion bound to peroxide groups.
CHEMISTRY-A EUROPEAN JOURNAL
(2023)
Article
Chemistry, Multidisciplinary
Xiaowei Song, Qingce Zang, Chao Li, Tianhao Zhou, Richard N. N. Zare
Summary: We developed an immunoassay-based desorption electrospray ionization mass spectrometry imaging (immuno-DESI-MSI) technique for visualizing functional macromolecules. Boronic acid mass tags (BMTs) were synthesized to label antibodies as MSI probes, which can be released from the antibody by cleaving the boronic ester bond under acidic conditions. The BMTs can work in both optical and MS imaging modes and can be readily identified due to the introduction of the boron element.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2023)
Editorial Material
Biochemistry & Molecular Biology
Rafal Franski, Monika Beszterda-Buszczak
Summary: Villalva et al. evaluated the potential of yarrow extract as a treatment for H. pylori infection. They used the agar-well diffusion bioassay to test the extract's antimicrobial activity. The extract was fractionated into two fractions containing polar phenolic compounds and monoterpenes and sesquiterpenes, respectively. The phenolic compounds were identified using HPLC-ESIMS, but there were some disputed product ions.
Article
Biochemical Research Methods
Daniel Abate-Pella, Dana M. Freund, Yan Ma, Yamil Simon-Manso, Juliane Hollender, Corey D. Broeckling, David V. Huhman, Oleg V. Krokhin, Dwight R. Stoll, Adrian D. Hegeman, Tobias Kind, Oliver Fiehn, Emma L. Schymanski, Jessica E. Prenni, Lloyd W. Sumner, Paul G. Boswell
JOURNAL OF CHROMATOGRAPHY A
(2015)
Correction
Biochemical Research Methods
Kelly H. Telu, Xinjian Yan, William E. Wallace, Stephen E. Stein, Yamil Simon-Manso
RAPID COMMUNICATIONS IN MASS SPECTROMETRY
(2017)
Article
Biochemical Research Methods
Kelly H. Telu, Xinjian Yan, William E. Wallace, Stephen E. Stein, Yamil Simon-Manso
RAPID COMMUNICATIONS IN MASS SPECTROMETRY
(2016)
Editorial Material
Instruments & Instrumentation
Kelly H. Telu, Xinjian Yan, William E. Wallace, Stephen E. Stein, Yamil Simon-Manso
JOURNAL OF RESEARCH OF THE NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY
(2016)
Article
Biochemical Research Methods
Maria Lorna A. De Leoz, Yamil Simon-Manso, Robert J. Woods, Stephen E. Stein
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
(2019)
Article
Chemistry, Analytical
Yamil Simon-Manso, Ramesh Marupaka, Xinjian Yan, Yuxue Liang, Kelly H. Telu, Yuri Mirokhin, Stephen E. Stein
ANALYTICAL CHEMISTRY
(2019)
Article
Chemistry, Analytical
Brian T. Cooper, Xinjian Yan, Yamil Simon-Manso, Dmitrii V. Tchekhovskoi, Yuri A. Mirokhin, Stephen E. Stein
ANALYTICAL CHEMISTRY
(2019)
Article
Biochemistry & Molecular Biology
Daniel W. Bearden, David A. Sheen, Yamil Simon-Manso, Bruce A. Benner, Werickson F. C. Rocha, Niksa Blonder, Katrice A. Lippa, Richard D. Beger, Laura K. Schnackenberg, Jinchun Sun, Khyati Y. Mehta, Amrita K. Cheema, Haiwei Gu, Ramesh Marupaka, G. A. Nagana Gowda, Daniel Raftery
Correction
Chemistry, Analytical
Yamil Simon-Manso, Ramesh Marupaka, Xinjian Yan, Yuxue Liang, Kelly H. Telu, Yuri Mirokhin, Stephen E. Stein
ANALYTICAL CHEMISTRY
(2020)
Article
Biotechnology & Applied Microbiology
Kelly H. Telu, Ramesh Marupaka, Nirina R. Andriamaharavo, Yamil Simon-Manso, Yuxue Liang, Yuri A. Mirokhin, Tallat H. Bukhari, Renae J. Preston, Lila Kashi, Zvi Kelman, Stephen E. Stein
Summary: This study implemented a new type of mass spectral library for CHO cell metabolite analysis and developed a filtering method. The research team created a comprehensive library for identifying metabolites.
BIOTECHNOLOGY AND BIOENGINEERING
(2021)
Article
Biochemical Research Methods
Yuxue Liang, Yamil Simon-Manso, Pedatsur Neta, Xiaoyu Yang, Stephen E. Stein
Summary: This study investigated tandem mass spectral characteristics and reaction mechanisms of aromatic sulfonamides, showing different product ions under different conditions, and involving nitrogen-oxygen rearrangement mechanism and Smiles-type rearrangement. The experimental results and Density Functional Theory calculations provided corresponding activation energies, supporting the proposed parallel mechanism.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
(2021)
Article
Biochemical Research Methods
Yuxue Liang, Yamil Simon-Manso, Pedatsur Neta, Stephen E. Stein
Summary: A nitrogen-oxygen Smiles rearrangement was reported to occur after collisional activation of the PhN(R)CH2CH2O- anion, leading to the formation of a phenoxide ion. The location of the negative charge determines whether Smiles rearrangement can occur, with alternative neutral losses dominating when the negative charge is on the nitrogen atom.
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
(2022)
Article
Chemistry, Physical
Yamil Simon-Manso
Summary: Ion mobility spectrometry is a popular tool for separating and identifying ionized molecules in the gas phase. The mobility of the ion depends on its collision cross section with the buffer gas molecules. A modified Langevin model is proposed and solved using algebraic perturbation theory, providing an analytical expression for the collision cross section that depends on the ion's dipole polarizability and ionization energy. The equation has been validated using ion mobility data and shows promise for various applications in different areas.
JOURNAL OF PHYSICAL CHEMISTRY A
(2023)
Meeting Abstract
Chemistry, Multidisciplinary
David Sheen, Bruce Benner, Yamil Simon, Werickson F. C. Rocha, Christina Jones, Niksa Blonder, Katrice Lippa
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
(2018)