4.6 Article

Chiral expression at the solid-liquid interface: A joint experimental and theoretical study of the self-assembly of chiral porphyrins on graphite

期刊

LANGMUIR
卷 24, 期 17, 页码 9566-9574

出版社

AMER CHEMICAL SOC
DOI: 10.1021/la8017419

关键词

-

资金

  1. Direccion General de Investigacion, Ciencia y Tecnologia (MEC, Spain) [CTQ2006-06333/BQU]
  2. DGR, Catalonia [SGR-00591]
  3. European Union Marie Curie Research Training Network CHEXTAN [MRTN-CT-2004-512161]
  4. Belgian Federal Science Policy Office [PAI 6/27]
  5. FNRS-FRFC

向作者/读者索取更多资源

The chiral organization of an enantiopure functional molecule on an achiral surface has been studied with the aim of understanding the influence of stereogenic centers on the self-assembly in two dimensions. A chiral tetra mesoamidophenyl-substituted porphyrin containing long hydrophobic tails at the periphery of the conjugated T-electron system was prepared for this purpose. Scanning tunneling microscopy (STM) images of the compound at the graphite-heptanol interface reveal a chiral arrangement of the molecules, with the porphyrin rows tilted by 13 degrees with respect to the normal to the graphite axes. In terms of molecular modeling, a combination of molecular dynamics simulations on systems constrained by periodic boundary conditions and on unconstrained large molecular aggregates has been applied to reach a quantitative interpretation on both the density of the layer and its orientation with respect to the graphite surface. The results show clearly that (i) the methyl groups of the stereogenic point toward the graphite surface and (ii) the porphyrin molecules self-assemble into an interdigitated structure where the alkyl chains align along one of the graphite axes and the porphyrin cores are slightly shifted with respect to one another. The direction of this shift. which defines the chirality of the monolayer, is set by the chirality of the stereogenic centers. Such an arrangement results in the formation of a dense chiral monolayer that is further stabilized by hydrogen bonding with protic solvents.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Chemistry, Physical

Bond defects in graphene created by ultralow energy ion implantation

Renan Villarreal, Pin-Cheng Lin, Zviadi Zarkua, Harsh Bana, Hung-Chieh Tsai, Manuel Auge, Felix Junge, Hans Hofsaess, Ezequiel Tosi, Steven De Feyter, Stefan De Gendt, Steven Brems, E. Harriet ahlgren, Lino M. C. Pereira

Summary: Ultralow energy (ULE) ion implantation is increasingly used to modify 2D materials, in particular, graphene. However, the disorder induced by ion irradiation in this low-energy limit remains poorly understood.

CARBON (2023)

Article Chemistry, Physical

Indication of 310-Helix Structure in Gas-Phase Neutral Pentaalanine

Ake Andersson, Vasyl Yatsyna, Mathieu Linares, Anouk Rijs, Vitali Zhaunerchyk

Summary: We investigate the gas-phase structure of the neutral pentaalanine peptide using supersonic jet cooling, infrared multiphoton dissociation, and vacuum-ultraviolet action spectroscopy. The molecule assumes multiple stable conformations, mainly of two structure types, with the most stable conformation featuring a C5 ring at the N-terminus and a 310-helix backbone with two beta-turns. The conformational preferences of pentaalanine are also evaluated using Born-Oppenheimer molecular dynamics, revealing a systematic frequency shift caused by a nonzero simulation time step.

JOURNAL OF PHYSICAL CHEMISTRY A (2023)

Article Chemistry, Physical

Quantifying the Cooperative Process of Molecular Self-Assembly on Surfaces: A Case Study of Isophthalic Acids

Tamara Rinkovec, Demian Kalebic, Mark Van der Auweraer, Wim Dehaen, Jeremy N. Harvey, Steven De Feyter

Summary: In this study, the effect of concentration on the self-assembled molecular network formation process was investigated using scanning tunneling microscopy. Isophthalic acids were chosen as a model system, and the adsorption behavior was evaluated at the nanoscale. The results showed the existence of a critical concentration for self-assembly, with the molecular structure having a significant impact on this threshold value. Furthermore, highly cooperative behavior was observed at the liquid/solid interface, providing a rare example of quantitative measurement of cooperative phenomena.

JOURNAL OF PHYSICAL CHEMISTRY C (2023)

Article Chemistry, Multidisciplinary

Spontaneous and scanning-assisted desorption-adsorption dynamics in porous supramolecular networks at the solution-solid interface

Yuan Fang, Oleksandr Ivasenko, Ana Sanz-Matias, Kunal S. Mali, Kazukuni Tahara, Yoshito Tobe, Steven De Feyter

Summary: Self-assembled molecular networks (SAMNs) are spontaneously formed through the assembly of molecules on surfaces. Scanning tunneling microscopy (STM) can track their growth dynamics on conductive atomically flat surfaces and at the liquid-solid interface. Desorption and adsorption dynamics are challenging to investigate through the liquid-solid interface. Porous molecular networks have attracted particular interest as they can act as platforms for sensing and host-guest chemistry. However, their stability in a liquid environment is still poorly understood. In this study, the authors investigated the desorption/adsorption dynamics of supramolecular porous monolayers at the interface between highly oriented pyrolytic graphite and 1-phenyloctane, and revealed the time scales, temperature dependence, and the role of STM tip in inducing dynamics.

NANOSCALE (2023)

Article Chemistry, Physical

Molecular Alignment and Chiral Bias under Dynamic Nanoconfinement Conditions: The Impact of Molecular Symmetry

Zeno Tessari, Kazukuni Tahara, Steven De Feyter

Summary: When molecules self-assemble on graphene, six orientational domains are usually formed, which can be classified into two sets of packing chirality. Dynamic nanoconfinement conditions disrupt the equivalence of orientational domains and can result in selective formation of enantiomorphic packings. In this study, we investigate the self-assembly of a molecule with four alkyl chains under dynamic nanoconfinement conditions and find biased formation of rotational domains and partial chiral selection. This highlights the significance of using dynamic nanoconfinement conditions to control domain orientation and disturb chirality equivalence.

JOURNAL OF PHYSICAL CHEMISTRY C (2023)

Article Chemistry, Physical

Ionic Liquid-Graphene Interface: Effect of Anions on the Fermi Level

Gangamallaiah Velpula, Jian Xiang Lian, David Cornil, David Beljonne, Roberto Lazzaroni, Kunal S. Mali, Steven De Feyter

Summary: This study investigates the impact of the anions in imidazolium-based ionic liquids (ILs) on the interface between ILs and graphene, as well as on the electronic structure of graphene. Raman spectroscopy reveals that ILs with smaller anions lead to n-type doping, while ILs with larger anions have a negligible effect on doping. Molecular modeling simulations suggest that changes in the electrostatic potential at the IL-graphene interface are responsible for the n-type doping.

JOURNAL OF PHYSICAL CHEMISTRY C (2023)

Article Chemistry, Multidisciplinary

Spatially Controlled Aryl Radical Grafting of Graphite Surfaces Guided by Self-Assembled Molecular Networks of Linear Alkane Derivatives: The Importance of Conformational Dynamics

Sota Aoi, Shingo Hirose, Kanagawa Wakana Soeda, Hiromasa Kaneko, Kunal S. Mali, Steven De Feyter, Kazukuni Tahara

Summary: We demonstrate the controlled grafting of graphite surfaces using electrochemically generated aryl radicals templated by self-assembled molecular networks (SAMNs) of bisalkylurea derivatives. The degree of dynamics at the alkyl termini and strong intermolecular interactions play a crucial role in the covalent attachment.

LANGMUIR (2023)

Article Chemistry, Physical

Binding of a Pyrene-Based Fluorescent Amyloid Ligand to Transthyretin: A Combined Crystallographic and Molecular Dynamics Study

Nghia Nguyen Thi Minh, Afshan Begum, Jun Zhang, Petter Leira, Yogesh Todarwal, Mathieu Linares, Patrick Norman, Dean Derbyshire, Eleonore von Castelmur, Mikael Lindgren, Per Hammarstroem, Carolin Koenig

Summary: Misfolding and aggregation of transthyretin (TTR) can lead to various amyloid diseases. TTR not only acts as an amyloidogenic protein but also has an affinity for small-molecule ligands in its thyroxine (T4) binding site. In this study, we investigated the binding of a fluorescent amyloid ligand, Py1SA, to tetrameric TTR using spectroscopic evidence and X-ray crystallography. Although the X-ray diffraction data were inconclusive, molecular dynamics simulations and umbrella sampling approaches were used to determine the preferred orientation of the ligand in the T4 binding site. Our findings provide insights into the binding mode preference of TTR for trans-stilbene salicylic acid derivatives and a framework for determining structures of TTR-ligand complexes.

JOURNAL OF PHYSICAL CHEMISTRY B (2023)

Article Chemistry, Multidisciplinary

Stacked or Folded? Impact of Chelate Cooperativity on the Self-Assembly Pathway to Helical Nanotubes from Dinucleobase Monomers

Marina Gonzalez-Sanchez, Mariia J. Mayoral, Violeta Vazquez-Gonzalez, Marketa Paloncyova, Irene Sancho-Casado, Fatima Aparicio, Alberto de Juan, Giovanna Longhi, Patrick Norman, Mathieu Linares, David Gonzalez-Rodriguez

Summary: Self-assembled nanotubes with distinct internal arrangements and properties are achieved through different supramolecular scenarios prior to polymerization, driven by chelate cooperativity and self-recognition motifs at the edges. The chosen supramolecular pathway for structurally related molecules with complementary nucleobases is determined by their propensity for specific cyclic structures through Watson-Crick pairing. These findings provide insight into the unpredictability and experimental evaluation of self-assembly pathways, as well as the design of functional nanomaterials with controlled helicity and chiroptical properties.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Article Chemistry, Analytical

Molecular Surface Quantification of Multifunctionalized Gold Nanoparticles Using UV-Visible Absorption Spectroscopy Deconvolution

Jordan C. Potts, Akhil Jain, David B. Amabilino, Frankie J. Rawson, Lluisa Perez-Garcia

Summary: This study presents a new method based on UV-visible absorption spectrum to accurately calculate the concentration and number of molecules bound to multifunctional AuNPs. The method is able to reveal the precise binding situation of Cyt C and Zn Porph molecules with each multifunctional AuNP, providing valuable information for applications in drug delivery and biosensors.

ANALYTICAL CHEMISTRY (2023)

Article Chemistry, Physical

Quantifying the Cooperative Process of Molecular Self-Assembly on Surfaces: A Case Study of Isophthalic Acids

Tamara Rinkovec, Demian Kalebic, Mark Van der Auweraer, Wim Dehaen, Jeremy N. Harvey, Steven De Feyter

Summary: This study investigates the effect of concentration on the self-assembly process of molecular networks using scanning tunneling microscopy. The research aims to improve the understanding of 2D supramolecular chemistry by obtaining quantitative data. The results show highly cooperative behavior and the significant impact of molecular structure on the critical concentration.

JOURNAL OF PHYSICAL CHEMISTRY C (2023)

Article Chemistry, Physical

On-surface polymerisation and self-assembly of DPP-based molecular wires

Michael Clarke, Abigail Bellamy-Carter, Ferdinando Malagreca, Jack Hart, Stephen P. Argent, James N. O'Shea, David B. Amabilino, Alex Saywell

Summary: The incorporation of organic semiconducting materials within solid-state electronic devices is important for highly efficient photovoltaics, transistors, and light emitting diodes. This study focuses on the formation of a polymer based on a diketopyrrolopyrrole (DPP) monomer unit, which is synthesized on a surface and possesses aryl-halide groups for covalent coupling. The self-assembly of both the monomer material and the domains of polymeric material are investigated using scanning tunneling microscopy and X-ray photoelectron spectroscopy.

MOLECULAR SYSTEMS DESIGN & ENGINEERING (2023)

Article Chemistry, Multidisciplinary

Formation of Supramolecular Heterostacks at the Liquid-Solid Interface: Impact of Symmetry Mismatching on Structural Growth

Yuta Sato, Steven De Feyter, Kazukuni Tahara

Summary: This study reports the formation of porous structures on alkane buffer layers on graphite through molecular self-assembly. Dehydrobenzo[12]-annulene (DBA) derivative was found to form hexagonal structures on n-pentacontane and n-hexacontane buffer layers through van der Waals interactions. The nucleation and structural growth of the DBA network on a buffer layer were discussed, and a hierarchical multicomponent structure was formed through heteromolecular coadsorption. This study provides insights into the construction of intricate 3D nanoarchitectures using self-assembly at interfaces.

LANGMUIR (2023)

Article Chemistry, Multidisciplinary

Homochiral hierarchical molecular assemblies through dynamic combination of conformational states of a single chiral building block at the liquid/solid interface

Matsuhiro Maeda, Kazuya Sato, Steven De Feyter, Kazukuni Tahara

Summary: We report the construction of homochiral, hierarchical self-assembled molecular networks at the liquid/graphite interface using a single chiral molecular building block through dynamic self-sorting.

NANOSCALE (2023)

Article Materials Science, Multidisciplinary

Conducting poly(3,4-ethylenedioxythiophene) materials with sustainable carrageenan counter-ions and their thermoelectric properties

Zhongnan Duan, Joseph Phillips, Letizia Liiro-Peluso, Simon Woodward, Oleg Makarovsky, Michael P. Weir, H. Jessica Pereira, David B. Amabilino

Summary: The preparation and properties of conducting polymers comprising poly(3,4-ethylenedioxythiophene) (PEDOT) and carrageenan are described. The aim is to provide alternative and sustainable materials that can complement existing conducting polymers. The materials were prepared using chemical oxidation and show good conductivity and thermoelectric properties.

MATERIALS ADVANCES (2023)

暂无数据