Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics
出版年份 2015 全文链接
标题
Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics
作者
关键词
-
出版物
Proteomics Clinical Applications
Volume 9, Issue 7-8, Pages 745-754
出版商
Wiley
发表日期
2015-01-30
DOI
10.1002/prca.201400164
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Analytical Validation Considerations of Multiplex Mass-Spectrometry-Based Proteomic Platforms for Measuring Protein Biomarkers
- (2014) Emily S. Boja et al. JOURNAL OF PROTEOME RESEARCH
- Processing Shotgun Proteomics Data on the Amazon Cloud with the Trans-Proteomic Pipeline
- (2014) Joseph Slagel et al. MOLECULAR & CELLULAR PROTEOMICS
- The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience
- (2014) Johannes Griss et al. MOLECULAR & CELLULAR PROTEOMICS
- Proteogenomic characterization of human colon and rectal cancer
- (2014) Bing Zhang et al. NATURE
- ProteomeXchange provides globally coordinated proteomics data submission and dissemination
- (2014) Juan A Vizcaíno et al. NATURE BIOTECHNOLOGY
- Shotgun-proteomics-based clinical testing for diagnosis and classification of amyloidosis
- (2013) Jason D. Theis et al. JOURNAL OF MASS SPECTROMETRY
- The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics
- (2013) Mathias Walzer et al. MOLECULAR & CELLULAR PROTEOMICS
- PRIDE Cluster: building a consensus of proteomics data
- (2013) Johannes Griss et al. NATURE METHODS
- The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud
- (2013) Katherine Wolstencroft et al. NUCLEIC ACIDS RESEARCH
- A Blood-Based Proteomic Classifier for the Molecular Characterization of Pulmonary Nodules
- (2013) X.-j. Li et al. Science Translational Medicine
- Connecting Genomic Alterations to Cancer Biology with Proteomics: The NCI Clinical Proteomic Tumor Analysis Consortium
- (2013) M. J. Ellis et al. Cancer Discovery
- The State of the Human Proteome in 2012 as Viewed through PeptideAtlas
- (2012) Terry Farrah et al. JOURNAL OF PROTEOME RESEARCH
- File Formats Commonly Used in Mass Spectrometry Proteomics
- (2012) Eric W. Deutsch MOLECULAR & CELLULAR PROTEOMICS
- The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results
- (2012) Andrew R. Jones et al. MOLECULAR & CELLULAR PROTEOMICS
- Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis
- (2012) Ludovic C. Gillet et al. MOLECULAR & CELLULAR PROTEOMICS
- A cross-platform toolkit for mass spectrometry and proteomics
- (2012) Matthew C Chambers et al. NATURE BIOTECHNOLOGY
- Comet: An open-source MS/MS sequence database search tool
- (2012) Jimmy K. Eng et al. PROTEOMICS
- Regulatory Considerations for Clinical Mass Spectrometry: Multiple Reaction Monitoring
- (2011) Emily S. Boja et al. CLINICS IN LABORATORY MEDICINE
- iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates
- (2011) David Shteynberg et al. MOLECULAR & CELLULAR PROTEOMICS
- A High-Confidence Human Plasma Proteome Reference Set with Estimated Concentrations in PeptideAtlas
- (2011) Terry Farrah et al. MOLECULAR & CELLULAR PROTEOMICS
- A Face in the Crowd: Recognizing Peptides Through Database Search
- (2011) Jimmy K. Eng et al. MOLECULAR & CELLULAR PROTEOMICS
- mProphet: automated data processing and statistical validation for large-scale SRM experiments
- (2011) Lukas Reiter et al. NATURE METHODS
- The Effect of Using an Inappropriate Protein Database for Proteomic Data Analysis
- (2011) Giselle M. Knudsen et al. PLoS One
- Skyline: an open source document editor for creating and analyzing targeted proteomics experiments
- (2010) Brendan MacLean et al. BIOINFORMATICS
- A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
- (2010) Alexey I. Nesvizhskii Journal of Proteomics
- mzML—a Community Standard for Mass Spectrometry Data
- (2010) Lennart Martens et al. MOLECULAR & CELLULAR PROTEOMICS
- A guided tour of the Trans-Proteomic Pipeline
- (2010) Eric W. Deutsch et al. PROTEOMICS
- Protein Identification False Discovery Rates for Very Large Proteomics Data Sets Generated by Tandem Mass Spectrometry
- (2009) Lukas Reiter et al. MOLECULAR & CELLULAR PROTEOMICS
- ProteoWizard: open source software for rapid proteomics tools development
- (2008) Darren Kessner et al. BIOINFORMATICS
- PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
- (2008) Eric W Deutsch et al. EMBO REPORTS
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
- (2008) Jürgen Cox et al. NATURE BIOTECHNOLOGY
- Building consensus spectral libraries for peptide identification in proteomics
- (2008) Henry Lam et al. NATURE METHODS
- Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics
- (2008) Eric W. Deutsch et al. PHYSIOLOGICAL GENOMICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now