Integration of RNA-seq and proteomics data with genomics for improved genome annotation in Apicomplexan parasites

Asexual expansion of Toxoplasma gondii merozoites is distinct from tachyzoites and entails expression of non-overlapping gene families to attach, invade, and replicate within feline enterocytes

(2015) Adrian B Hehl et al.   BMC GENOMICS

A large-scale proteogenomics study of apicomplexan pathogens-Toxoplasma gondiiandNeospora caninum

(2015) Ritesh Krishna et al.   PROTEOMICS

Comprehensive Evaluation of Toxoplasma gondii VEG and Neospora caninum LIV Genomes with Tachyzoite Stage Transcriptome and Proteome Defines Novel Transcript Features

(2015) Abhinay Ramaprasad et al.   PLoS One

Distinct Strains of Toxoplasma gondii Feature Divergent Transcriptomes Regardless of Developmental Stage

(2014) Matthew McKnight Croken et al.   PLoS One

De novo reconstruction of the Toxoplasma gondii transcriptome improves on the current genome annotation and reveals alternatively spliced transcripts and putative long non-coding RNAs

(2012) Musa A Hassan et al.   BMC GENOMICS

Characterization of Toxoplasma gondii 5′ UTR with Encyclopedic TSS Information

(2012) J. Yamagishi et al.   JOURNAL OF PARASITOLOGY

EuPathDB: The Eukaryotic Pathogen database

(2012) C. Aurrecoechea et al.   NUCLEIC ACIDS RESEARCH

Parasites, proteomes and systems: has Descartes’ clock run out of time?

(2012) J. M. WASTLING et al.   PARASITOLOGY

Comparative Genomics of the Apicomplexan Parasites Toxoplasma gondii and Neospora caninum: Coccidia Differing in Host Range and Transmission Strategy

(2012) Adam James Reid et al.   PLoS Pathogens

Comprehensive Proteomic Analysis of Membrane Proteins inToxoplasma gondii

(2010) Fa-Yun Che et al.   MOLECULAR & CELLULAR PROTEOMICS

Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs

(2009) Hiroyuki Wakaguri et al.   BMC GENOMICS

Computational Analysis and Experimental Validation of Gene Predictions in Toxoplasma gondii

(2008) Joseph M. Dybas et al.   PLoS One

The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation

(2008) Dong Xia et al.   GENOME BIOLOGY