Evaluation of transmembrane helix predictions in 2014

PredictProtein—an open resource for online prediction of protein structural and functional features

(2014) Guy Yachdav et al.   NUCLEIC ACIDS RESEARCH

A benchmark server using high resolution protein structure data, and benchmark results for membrane helix predictions

(2013) Emma M Rath et al.   BMC BIOINFORMATICS

Coordinating the impact of structural genomics on the human α-helical transmembrane proteome

(2013) Ursula Pieper et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

LocTree2 predicts localization for all domains of life

(2012) Tatyana Goldberg et al.   BIOINFORMATICS

Three-Dimensional Structures of Membrane Proteins from Genomic Sequencing

(2012) Thomas A. Hopf et al.   CELL

Structural genomics plucks high-hanging membrane proteins

(2012) Edda Kloppmann et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A guideline to proteome-wide α-helical membrane protein topology predictions

(2012) Konstantinos D. Tsirigos et al.   PROTEOMICS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

OPM database and PPM web server: resources for positioning of proteins in membranes

(2011) Mikhail A. Lomize et al.   NUCLEIC ACIDS RESEARCH

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

Transmembrane helices predicted at 95% accuracy

(2010) Burkhard Rost et al.   PROTEIN SCIENCE

Prediction of the human membrane proteome

(2010) Linn Fagerberg et al.   PROTEOMICS

Transmembrane protein topology prediction using support vector machines

(2009) Timothy Nugent et al.   BMC BIOINFORMATICS

Membrane Insertion of Marginally Hydrophobic Transmembrane Helices Depends on Sequence Context

(2009) Linnea E. Hedin et al.   JOURNAL OF MOLECULAR BIOLOGY

Integrating Diverse Data for Structure Determination of Macromolecular Assemblies

(2008) Frank Alber et al.   Annual Review of Biochemistry

OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar

(2008) Håkan Viklund et al.   BIOINFORMATICS

SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology

(2008) Håkan Viklund et al.   BIOINFORMATICS

Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features

(2008) Timo Lassmann et al.   NUCLEIC ACIDS RESEARCH

Prediction of membrane-protein topology from first principles

(2008) A. Bernsel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks

(2008) Sheila M. Reynolds et al.   PLoS Computational Biology

Transmembrane helix predictions revisited

(2002) Chien Peter Chen et al.   PROTEIN SCIENCE