Widespread Impact of HLA Restriction on Immune Control and Escape Pathways of HIV-1

Post-proteasomal and proteasome-independent generation of MHC class I ligands

(2011) Peter van Endert   CELLULAR AND MOLECULAR LIFE SCIENCES

HLA-A*7401-Mediated Control of HIV Viremia Is Independent of Its Linkage Disequilibrium with HLA-B*5703

(2011) P. C. Matthews et al.   JOURNAL OF IMMUNOLOGY

HLA-B*57 Micropolymorphism Shapes HLA Allele-Specific Epitope Immunogenicity, Selection Pressure, and HIV Immune Control

(2011) H. N. Kloverpris et al.   JOURNAL OF VIROLOGY

Progression to AIDS in South Africa Is Associated with both Reverting and Compensatory Viral Mutations

(2011) Kuan-Hsiang Gary Huang et al.   PLoS One

Viral adaptation to immune selection pressure by HLA class I–restricted CTL responses targeting epitopes in HIV frameshift sequences

(2010) Christoph T. Berger et al.   JOURNAL OF EXPERIMENTAL MEDICINE

CD8 T cell response and evolutionary pressure to HIV-1 cryptic epitopes derived from antisense transcription

(2010) Anju Bansal et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Adaptive Interactions between HLA and HIV-1: Highly Divergent Selection Imposed by HLA Class I Molecules with Common Supertype Motifs

(2010) M. John et al.   JOURNAL OF IMMUNOLOGY

Virus-Specific CD8+ T-Cell Responses Better Define HIV Disease Progression than HLA Genotype

(2010) W. L. Dinges et al.   JOURNAL OF VIROLOGY

Additive Contribution of HLA Class I Alleles in the Immune Control of HIV-1 Infection

(2010) A. Leslie et al.   JOURNAL OF VIROLOGY

Antiretroviral Regimens in Pregnancy and Breast-Feeding in Botswana

(2010) R.L. Shapiro et al.   NEW ENGLAND JOURNAL OF MEDICINE

The Major Genetic Determinants of HIV-1 Control Affect HLA Class I Peptide Presentation

(2010)   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and their association with viral load in chronic untreated infection

(2009) Zabrina L Brumme et al.   AIDS

Prevalence of HIV type-1 drug-associated mutations in pre-therapy patients in the Free State, South Africa

(2009) Kuan-Hsiang Gary Huang et al.   ANTIVIRAL THERAPY

HLA-Associated Viral Mutations Are Common in Human Immunodeficiency Virus Type 1 Elite Controllers

(2009) T. Miura et al.   JOURNAL OF VIROLOGY

Antigen processing influences HIV-specific cytotoxic T lymphocyte immunodominance

(2009) Stefan Tenzer et al.   NATURE IMMUNOLOGY

HLA-Associated Immune Escape Pathways in HIV-1 Subtype B Gag, Pol and Nef Proteins

(2009) Zabrina L. Brumme et al.   PLoS One

Unique features of HLA-mediated HIV evolution in a Mexican cohort: a comparative study

(2009) Santiago Avila-Rios et al.   Retrovirology

The HLA dictionary 2008: a summary of HLA-A, -B, -C, -DRB1/3/4/5, and -DQB1 alleles and their association with serologically defined HLA-A, -B, -C, -DR, and -DQ antigens

(2009) R. Holdsworth et al.   TISSUE ANTIGENS

Viral fitness implications of variation within an immunodominant CD8+ T-cell epitope of HIV-1

(2009) N.M. Christie et al.   VIROLOGY

Variable Fitness Impact of HIV-1 Escape Mutations to Cytotoxic T Lymphocyte (CTL) Response

(2009) Ryan M. Troyer et al.   PLoS Pathogens

HLA class I supertypes: a revised and updated classification

(2008) John Sidney et al.   BMC IMMUNOLOGY

Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients

(2008) Paul A. Goepfert et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Structural and Functional Constraints Limit Options for Cytotoxic T-Lymphocyte Escape in the Immunodominant HLA-B27-Restricted Epitope in Human Immunodeficiency Virus Type 1 Capsid

(2008) A. Schneidewind et al.   JOURNAL OF VIROLOGY

HLA Class I-Driven Evolution of Human Immunodeficiency Virus Type 1 Subtype C Proteome: Immune Escape and Viral Load

(2008) C. M. Rousseau et al.   JOURNAL OF VIROLOGY

HLA-B57/B*5801 Human Immunodeficiency Virus Type 1 Elite Controllers Select for Rare Gag Variants Associated with Reduced Viral Replication Capacity and Strong Cytotoxic T-Lymphotye Recognition

(2008) T. Miura et al.   JOURNAL OF VIROLOGY

Protective HLA Class I Alleles That Restrict Acute-Phase CD8+ T-Cell Responses Are Associated with Viral Escape Mutations Located in Highly Conserved Regions of Human Immunodeficiency Virus Type 1

(2008) Y. E. Wang et al.   JOURNAL OF VIROLOGY

Marked Epitope- and Allele-Specific Differences in Rates of Mutation in Human Immunodeficiency Type 1 (HIV-1) Gag, Pol, and Nef Cytotoxic T-Lymphocyte Epitopes in Acute/Early HIV-1 Infection

(2008) Z. L. Brumme et al.   JOURNAL OF VIROLOGY

Central Role of Reverting Mutations in HLA Associations with Human Immunodeficiency Virus Set Point

(2008) P. C. Matthews et al.   JOURNAL OF VIROLOGY

HIV evolution in response to HLA-restricted CTL selection pressures: a population-based perspective

(2008) Jonathan M. Carlson et al.   MICROBES AND INFECTION

Phylogenetic Dependency Networks: Inferring Patterns of CTL Escape and Codon Covariation in HIV-1 Gag

(2008) Jonathan M. Carlson et al.   PLoS Computational Biology