Article
Biochemistry & Molecular Biology
Katherine J. Siddle, Lydia A. Krasilnikova, Gage K. Moreno, Stephen F. Schaffner, Johanna Vostok, Nicholas A. Fitzgerald, Jacob E. Lemieux, Nikolaos Barkas, Christine Loreth, Ivan Specht, Christopher H. Tomkins-Tinch, Jillian S. Paull, Beau Schaeffer, Bradford P. Taylor, Bryn Loftness, Hillary Johnson, Petra L. Schubert, Hanna M. Shephard, Matthew Doucette, Timelia Fink, Andrew S. Lang, Stephanie Baez, John Beauchamp, Scott Hennigan, Erika Buzby, Stephanie Ash, Jessica Brown, Selina Clancy, Seana Cofsky, Luc Gagne, Joshua Hall, Rachel Harrington, Gabrielle L. Gionet, Katherine C. DeRuff, Megan E. Vodzak, Gordon C. Adams, Sabrina T. Dobbins, Sarah D. Slack, Steven K. Reilly, Lisa M. Anderson, Michelle C. Cipicchio, Matthew T. DeFelice, Jonna L. Grimsby, Scott E. Anderson, Brendan S. Blumenstiel, James C. Meldrim, Heather M. Rooke, Gina Vicente, Natasha L. Smith, Katelyn S. Messer, Faye L. Reagan, Zoe M. Mandese, Matthew D. Lee, Marianne C. Ray, Marissa E. Fisher, Maesha A. Ulcena, Corey M. Nolet, Sean E. English, Katie L. Larkin, Kyle Vernest, Sushma Chaluvadi, Deirdre Arvidson, Maurice Melchiono, Theresa Covell, Vaira Harik, Taylor Brock-Fisher, Molly Dunn, Amanda Kearns, William P. Hanage, Clare Bernard, Anthony Philippakis, Niall J. Lennon, Stacey B. Gabriel, Glen R. Gallagher, Sandra Smole, Lawrence C. Madoff, Catherine M. Brown, Daniel J. Park, Bronwyn L. MacInnis, Pardis C. Sabeti
Summary: An outbreak of COVID-19 cases in Provincetown, Massachusetts in July 2021, primarily affecting vaccinated individuals, was caused by the Delta variant. Genomic and epidemiological data indicated multiple transmissions of Delta among fully vaccinated individuals. Despite the large-scale outbreak, it had limited onward impact due to high vaccination rates and a robust public health response.
Article
Multidisciplinary Sciences
Houriiyah Tegally, James E. San, Matthew Cotten, Monika Moir, Bryan Tegomoh, Gerald Mboowa, Darren P. Martin, Cheryl Baxter, Arnold W. Lambisia, Amadou Diallo, Daniel G. Amoako, Moussa M. Diagne, Abay Sisay, Abdel-Rahman N. Zekri, Abdou Salam Gueye, Abdoul K. Sangare, Abdoul-Salam Ouedraogo, Abdourahmane Sow, Abdualmoniem O. Musa, Abdul K. Sesay, Abe G. Abias, Adam Elzagheid, Adamou Lagare, Adedotun-Sulaiman Kemi, Aden Elmi Abar, Adeniji A. Johnson, Adeola Fowotade, Adeyemi O. Oluwapelumi, Adrienne A. Amuri, Agnes Juru, Ahmed Kandeil, Ahmed Mostafa, Ahmed Rebai, Ahmed Sayed, Akano Kazeem, Aladje Balde, Alan Christoffels, Alexander J. Trotter, Allan Campbell, Alpha K. Keita, Amadou Kone, Amal Bouzid, Amal Souissi, Ambrose Agweyu, Amel Naguib, Ana Gutierrez, Anatole Nkeshimana, Andrew J. Page, Anges Yadouleton, Anika Vinze, Anise N. Happi, Anissa Chouikha, Arash Iranzadeh, Arisha Maharaj, Armel L. Batchi-Bouyou, Arshad Ismail, Augustina A. Sylverken, Augustine Goba, Ayoade Femi, Ayotunde E. Sijuwola, Baba Marycelin, Babatunde L. Salako, Bamidele S. Oderinde, Bankole Bolajoko, Bassirou Diarra, Belinda L. Herring, Benjamin Tsofa, Bernard Lekana-Douki, Bernard Mvula, Berthe-Marie Njanpop-Lafourcade, Blessing T. Marondera, Bouh Abdi Khaireh, Bourema Kouriba, Bright Adu, Brigitte Pool, Bronwyn McInnis, Cara Brook, Carolyn Williamson, Cassien Nduwimana, Catherine Anscombe, Catherine B. Pratt, Cathrine Scheepers, Chantal G. Akoua-Koffi, Charles N. Agoti, Chastel M. Mapanguy, Cheikh Loucoubar, Chika K. Onwuamah, Chikwe Ihekweazu, Christian N. Malaka, Christophe Peyrefitte, Chukwa Grace, Chukwuma E. Omoruyi, Clotaire D. Rafai, Collins M. Morang'a, Cyril Erameh, Daniel B. Lule, Daniel J. Bridges, Daniel Mukadi-Bamuleka, Danny Park, David A. Rasmussen, David Baker, David J. Nokes, Deogratius Ssemwanga, Derek Tshiabuila, Dominic S. Y. Amuzu, Dominique Goedhals, Donald S. Grant, Donwilliams O. Omuoyo, Dorcas Maruapula, Dorcas W. Wanjohi, Ebenezer Foster-Nyarko, Eddy K. Lusamaki, Edgar Simulundu, Edidah M. Ong'era, Edith N. Ngabana, Edward O. Abworo, Edward Otieno, Edwin Shumba, Edwine Barasa, El Bara Ahmed, Elhadi A. Ahmed, Emmanuel Lokilo, Enatha Mukantwari, Eromon Philomena, Essia Belarbi, Etienne Simon-Loriere, Etile A. Anoh, Eusebio Manuel, Fabian Leendertz, Fahn M. Taweh, Fares Wasfi, Fatma Abdelmoula, Faustinos T. Takawira, Fawzi Derrar, Fehintola Ajogbasile, Florette Treurnicht, Folarin Onikepe, Francine Ntoumi, Francisca M. Muyembe, Frank E. Z. Ragomzingba, Fred A. Dratibi, Fred-Akintunwa Iyanu, Gabriel K. Mbunsu, Gaetan Thilliez, Gemma L. Kay, George O. Akpede, Gert U. van Zyl, Gordon A. Awandare, Grace S. Kpeli, Grit Schubert, Gugu P. Maphalala, Hafaliana C. Ranaivoson, Hannah E. Omunakwe, Harris Onywera, Haruka Abe, Hela Karray, Hellen Nansumba, Henda Triki, Herve Alberic Adje Kadjo, Hesham Elgahzaly, Hlanai Gumbo, Hota Mathieu, Hugo Kavunga-Membo, Ibtihel Smeti, Idowu B. Olawoye, Ifedayo M. O. Adetifa, Ikponmwosa Odia, Ilhem Boutiba Ben Boubaker, Iluoreh Ahmed Mohammad, Isaac Ssewanyana, Isatta Wurie, Iyaloo S. Konstantinus, Jacqueline Wemboo Afiwa Halatoko, James Ayei, Janaki Sonoo, Jean-Claude C. Makangara, Jean-Jacques M. Tamfum, Jean-Michel Heraud, Jeffrey G. Shaffer, Jennifer Giandhari, Jennifer Musyoki, Jerome Nkurunziza, Jessica N. Uwanibe, Jinal N. Bhiman, Jiro Yasuda, Joana Morais, Jocelyn Kiconco, John D. Sandi, John Huddleston, John K. Odoom, John M. Morobe, John O. Gyapong, John T. Kayiwa, Johnson C. Okolie, Joicymara S. Xavier, Jones Gyamfi, Joseph F. Wamala, Joseph H. K. Bonney, Joseph Nyandwi, Josie Everatt, Joweria Nakaseegu, Joyce M. Ngoi, Joyce Namulondo, Judith U. Oguzie, Julia C. Andeko, Julius J. Lutwama, Juma J. H. Mogga, Justin O'Grady, Katherine J. Siddle, Kathleen Victoir, Kayode T. Adeyemi, Kefentse A. Tumedi, Kevin S. Carvalho, Khadija Said Mohammed, Koussay Dellagi, Kunda G. Musonda, Kwabena O. Duedu, Lamia Fki-Berrajah, Lavanya Singh, Lenora M. Kepler, Leon Biscornet, Leonardo de Oliveira Martins, Lucious Chabuka, Luicer Olubayo, Lul Deng Ojok, Lul Lojok Deng, Lynette Ochola-Oyier, Lynn Tyers, Madisa Mine, Magalutcheemee Ramuth, Maha Mastouri, Mahmoud ElHefnawi, Maimouna Mbanne, Maitshwarelo Matsheka, Malebogo Kebabonye, Mamadou Diop, Mambu Momoh, Maria da Luz Lima Mendonca, Marietjie Venter, Marietou F. Paye, Martin Faye, Martin M. Nyaga, Mathabo Mareka, Matoke-Muhia Damaris, Maureen W. Mburu, Maximillian G. Mpina, Michael Owusu, Michael R. Wiley, Mirabeau Y. Tatfeng, Mitoha Ondo'o Ayekaba, Mohamed Abouelhoda, Mohamed Amine Beloufa, Mohamed G. Seadawy, Mohamed K. Khalifa, Mooko Marethabile Matobo, Mouhamed Kane, Mounerou Salou, Mphaphi B. Mbulawa, Mulenga Mwenda, Mushal Allam, My V. T. Phan, Nabil Abid, Nadine Rujeni, Nadir Abuzaid, Nalia Ismael, Nancy Elguindy, Ndeye Marieme Top, Ndongo Dia, Nedio Mabunda, Nei-yuan Hsiao, Nelson Borico Silochi, Ngiambudulu M. Francisco, Ngonda Saasa, Nicholas Bbosa, Nickson Murunga, Nicksy Gumede, Nicole Wolter, Nikita Sitharam, Nnaemeka Ndodo, Nnennaya A. Ajayi, Noel Tordo, Nokuzola Mbhele, Norosoa H. Razanajatovo, Nosamiefan Iguosadolo, Nwando Mba, Ojide C. Kingsley, Okogbenin Sylvanus, Oladiji Femi, Olubusuyi M. Adewumi, Olumade Testimony, Olusola A. Ogunsanya, Oluwatosin Fakayode, Onwe E. Ogah, Ope-Ewe Oludayo, Ousmane Faye, Pamela Smith-Lawrence, Pascale Ondoa, Patrice Combe, Patricia Nabisubi, Patrick Semanda, Paul E. Oluniyi, Paulo Arnaldo, Peter Kojo Quashie, Peter O. Okokhere, Philip Bejon, Philippe Dussart, Phillip A. Bester, Placide K. Mbala, Pontiano Kaleebu, Priscilla Abechi, Rabeh El-Shesheny, Rageema Joseph, Ramy Karam Aziz, Rene G. Essomba, Reuben Ayivor-Djanie, Richard Njouom, Richard O. Phillips, Richmond Gorman, Robert A. Kingsley, Rosa Maria D. E. S. A. Neto Rodrigues, Rosemary A. Audu, Rosina A. A. Carr, Saba Gargouri, Saber Masmoudi, Sacha Bootsma, Safietou Sankhe, Sahra Isse Mohamed, Saibu Femi, Salma Mhalla, Salome Hosch, Samar Kamal Kassim, Samar Metha, Sameh Trabelsi, Sara Hassan Agwa, Sarah Wambui Mwangi, Seydou Doumbia, Sheila Makiala-Mandanda, Sherihane Aryeetey, Shymaa S. Ahmed, Side Mohamed Ahmed, Siham Elhamoumi, Sikhulile Moyo, Silvia Lutucuta, Simani Gaseitsiwe, Simbirie Jalloh, Soa Fy Andriamandimby, Sobajo Oguntope, Solene Grayo, Sonia Lekana-Douki, Sophie Prosolek, Soumeya Ouangraoua, Stephanie van Wyk, Stephen F. Schaffner, Stephen Kanyerezi, Steve Ahuka-Mundeke, Steven Rudder, Sureshnee Pillay, Susan Nabadda, Sylvie Behillil, Sylvie L. Budiaki, Sylvie van der Werf, Tapfumanei Mashe, Thabo Mohale, Thanh Le-Viet, Thirumalaisamy P. Velavan, Tobias Schindler, Tongai G. Maponga, Trevor Bedford, Ugochukwu J. Anyaneji, Ugwu Chinedu, Upasana Ramphal, Uwem E. George, Vincent Enouf, Vishvanath Nene, Vivianne Gorova, Wael H. Roshdy, Wasim Abdul Karim, William K. Ampofo, Wolfgang Preiser, Wonderful T. Choga, Yahaya Ali Ahmed, Yajna Ramphal, Yaw Bediako, Yeshnee Naidoo, Yvan Butera, Zaydah R. de Laurent, Ahmed E. O. Ouma, Anne von Gottberg, George Githinji, Matshidiso Moeti, Oyewale Tomori, Pardis C. Sabeti, Amadou A. Sall, Samuel O. Oyola, Yenew K. Tebeje, Sofonias K. Tessema, Tulio de Oliveira, Christian Happi, Richard Lessells, John Nkengasong, Eduan Wilkinson
Summary: Investment in SARS-CoV-2 sequencing in Africa has led to a significant increase in the number of sequences available for tracking the pandemic on the continent, surpassing 100,000 genomes. The study highlights the advantages of local sequencing in terms of faster turnaround times and routine surveillance. The findings underscore the heterogeneous nature of the pandemic and shed light on the dispersal dynamics of variants of concern in Africa.
