Modelling biological behaviours with the unified modelling language: an immunological case study and critique

In silico investigation of novel biological pathways: The role of CD200 in regulation of T cell priming in experimental autoimmune encephalomyelitis

(2013) Richard B. Greaves et al.   BIOSYSTEMS

Determining Disease Intervention Strategies Using Spatially Resolved Simulations

(2013) Mark Read et al.   PLoS One

Agent-based modeling: a systematic assessment of use cases and requirements for enhancing pharmaceutical research and development productivity

(2013) C. Anthony Hunt et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Spartan: A Comprehensive Tool for Understanding Uncertainty in Simulations of Biological Systems

(2013) Kieran Alden et al.   PLoS Computational Biology

Engineering Simulations for Cancer Systems Biology

(2012) James Bown et al.   CURRENT DRUG TARGETS

The case for open computer programs

(2012) Darrel C. Ince et al.   NATURE

State-Transition Diagrams for Biologists

(2012) Hugues Bersini et al.   PLoS One

Pairing experimentation and computational modeling to understand the role of tissue inducer cells in the development of lymphoid organs

(2012) Kieran Alden et al.   Frontiers in Immunology

Systems Biology in Immunology: A Computational Modeling Perspective

(2011) Ronald N. Germain et al.   Annual Review of Immunology

Techniques for grounding agent-based simulations in the real domain: a case study in experimental autoimmune encephalomyelitis

(2011) Mark Read et al.   MATHEMATICAL AND COMPUTER MODELLING OF DYNAMICAL SYSTEMS

Characterizing the Dynamics of CD4+ T Cell Priming within a Lymph Node

(2010) J. J. Linderman et al.   JOURNAL OF IMMUNOLOGY

The Systems Biology Graphical Notation

(2009) Nicolas Le Novère et al.   NATURE BIOTECHNOLOGY

A scenario-based approach to modeling development: A prototype model of C. elegans vulval fate specification

(2008) Na'aman Kam et al.   DEVELOPMENTAL BIOLOGY

Toward Verified Biological Models

(2008) A. Sadot et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Agent-based modeling of host–pathogen systems: The successes and challenges

(2008) Amy L. Bauer et al.   INFORMATION SCIENCES

The Lymph Node B Cell Immune Response: Dynamic Analysis In-Silico

(2008) N. Swerdlin et al.   PROCEEDINGS OF THE IEEE