标题
Heterogeneous Effects of Direct Hypoxia Pathway Activation in Kidney Cancer
作者
关键词
Cell binding, Prognosis, Binding analysis, Gene expression, Sequence motif analysis, Principal component analysis, Gene prediction, DNA transcription
出版物
PLoS One
Volume 10, Issue 8, Pages e0134645
出版商
Public Library of Science (PLoS)
发表日期
2015-08-12
DOI
10.1371/journal.pone.0134645
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
- (2014) Li Shen et al. BMC GENOMICS
- Pan-genomic binding of hypoxia-inducible transcription factors
- (2013) Johannes Schödel et al. BIOLOGICAL CHEMISTRY
- Extensive regulation of the non-coding transcriptome by hypoxia: role of HIF in releasing paused RNApol2
- (2013) Hani Choudhry et al. EMBO REPORTS
- Variation in chromatin accessibility in human kidney cancer links H3K36 methyltransferase loss with widespread RNA processing defects
- (2013) J. M. Simon et al. GENOME RESEARCH
- Oxygen sensing and hypoxia signalling pathways in animals: the implications of physiology for cancer
- (2013) Peter J. Ratcliffe JOURNAL OF PHYSIOLOGY-LONDON
- JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
- (2013) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- A novel significance score for gene selection and ranking
- (2012) Yufei Xiao et al. BIOINFORMATICS
- Dynamic Change of Chromatin Conformation in Response to Hypoxia Enhances the Expression of GLUT3 (SLC2A3) by Cooperative Interaction of Hypoxia-Inducible Factor 1 and KDM3A
- (2012) I. Mimura et al. MOLECULAR AND CELLULAR BIOLOGY
- Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing
- (2012) Marco Gerlinger et al. NEW ENGLAND JOURNAL OF MEDICINE
- Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
- (2011) Ryan K. Dale et al. BIOINFORMATICS
- High-resolution genome-wide mapping of HIF-binding sites by ChIP-seq
- (2011) J. Schodel et al. BLOOD
- Shape-based peak identification for ChIP-Seq
- (2011) Valerie Hower et al. BMC BIOINFORMATICS
- JunB promotes cell invasion and angiogenesis in VHL-defective renal cell carcinoma
- (2011) T Kanno et al. ONCOGENE
- Genetic and Functional Studies Implicate HIF1 as a 14q Kidney Cancer Suppressor Gene
- (2011) C. Shen et al. Cancer Discovery
- Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes
- (2010) Gillian L. Dalgliesh et al. NATURE
- GREAT improves functional interpretation of cis-regulatory regions
- (2010) Cory Y McLean et al. NATURE BIOTECHNOLOGY
- Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3
- (2010) Mark P Purdue et al. NATURE GENETICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Genome-wide Association of Hypoxia-inducible Factor (HIF)-1α and HIF-2α DNA Binding with Expression Profiling of Hypoxia-inducible Transcripts
- (2009) David R. Mole et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
- (2009) Elodie Portales-Casamar et al. NUCLEIC ACIDS RESEARCH
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- Defining the role of hypoxia-inducible factor 1 in cancer biology and therapeutics
- (2009) G L Semenza ONCOGENE
- Integrative analysis of HIF binding and transactivation reveals its role in maintaining histone methylation homeostasis
- (2009) X. Xia et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Preferential binding of HIF-1 to transcriptionally active loci determines cell-type specific response to hypoxia
- (2009) Xiaobo Xia et al. GENOME BIOLOGY
- HIF-α Effects on c-Myc Distinguish Two Subtypes of Sporadic VHL-Deficient Clear Cell Renal Carcinoma
- (2008) John D. Gordan et al. CANCER CELL
- Oxygen Sensing by Metazoans: The Central Role of the HIF Hydroxylase Pathway
- (2008) William G. Kaelin et al. MOLECULAR CELL
- Mapping and quantifying mammalian transcriptomes by RNA-Seq
- (2008) Ali Mortazavi et al. NATURE METHODS
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started